Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A16
         (849 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.7  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   3.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   7.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   9.3  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 171 SFLVNMLSKQNPRLFLLPVN 112
           SF+V  L + NP L+L+PV+
Sbjct: 230 SFVVWPLVENNPTLYLIPVS 249


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 171 SFLVNMLSKQNPRLFLLPVN 112
           SF+V  L + NP L+L+PV+
Sbjct: 230 SFVVWPLVENNPTLYLIPVS 249


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +3

Query: 435 VNPNVQKIDKFFELEPNKTKQPTGDNASDVVNDVDQQQKIPSEQDLNN 578
           +NP VQ           ++K+P GD   D     DQ + + +  + N+
Sbjct: 62  LNPAVQGSSLTEGKRSKRSKRPNGDTNGDTSQVDDQNESLEASVNENS 109


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 655 LAWPASVYCFHFS 617
           + WPA VYC  +S
Sbjct: 188 MLWPAWVYCTRYS 200


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 679 IPSD*NVSXPEDRNETDQ 732
           +  D N+S PED ++ DQ
Sbjct: 227 LEDDDNISDPEDDDDKDQ 244


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -3

Query: 409 FAASVGLSATSLGWAAPGRRACVYSTR 329
           F  + G     L W  PG+R   Y+ +
Sbjct: 128 FVKTWGFDGFDLDWEYPGQRGGAYNDK 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,528
Number of Sequences: 336
Number of extensions: 3080
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)