Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40032
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    28   1.6  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   8.3  

>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 338 CLIGVLELVCLTGSLAGVTTDFCGTFFSIHHHYYRHLMIP 219
           CL+G+  +V    S  GV   + G F+S+    Y  + IP
Sbjct: 311 CLVGLATVVLFALSSTGVIAPWTGRFYSLWDTNYAKIHIP 350


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 748 LQVCRRTLTHSFWFRFFHLHCYHRYLLKILSSWLQGSFSR 629
           +Q+C    +  F FR    H    YLL+ +SS ++  FS+
Sbjct: 571 MQLCSSLSSPRFLFRNPRNHLLLEYLLQAISSIVENKFSQ 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,463
Number of Sequences: 5004
Number of extensions: 47466
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)