Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40021
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   124   6e-30
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    29   0.33 
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    25   3.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   3.0  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    25   3.0  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.3  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    24   7.0  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    24   7.0  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    24   9.3  
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   9.3  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    24   9.3  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  124 bits (298), Expect = 6e-30
 Identities = 56/86 (65%), Positives = 69/86 (80%)
 Frame = -3

Query: 259 PMSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 80
           P+ V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNM
Sbjct: 116 PLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNM 175

Query: 79  LNISPFSYGLVVKQVYDSGTIFAPEI 2
           LNISPF+YG+ V  +YD G +F+PEI
Sbjct: 176 LNISPFTYGMDVLTIYDQGNVFSPEI 201



 Score = 60.9 bits (141), Expect = 7e-11
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = -1

Query: 381 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPCQSSFP 238
           +LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIAP     P
Sbjct: 75  RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVP 122


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 28.7 bits (61), Expect = 0.33
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 239 GNDD*HGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 361
           GN   H +MAP R+G+W   +N  S +  R+  +  K  +P
Sbjct: 230 GNHAYHASMAPKRSGSWR-HTNFHSTSHPRAASIGNKSGIP 269


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 140 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*H---GAMAPGRAGAW 289
           IVD  NS   +  R  + L ++G+L+  +GV GG +        M  G   AW
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYGPSLMPGGNPAAW 153


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 288 QAPARPGAIAPCQSSFPPTTPAS 220
           Q+  RP   AP + S PP +PAS
Sbjct: 134 QSELRPPTSAPPRPSIPPPSPAS 156


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 140 IVDDFNSTL*NLGRDRKSL 196
           +VD  NSTL N+GR R S+
Sbjct: 98  VVDSVNSTLNNIGRGRLSV 116


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 150 SSTMYTS*SPVTRLELLKPPFST 82
           +STMY S  P +     KPP+ T
Sbjct: 90  ASTMYASPPPSSNYNTAKPPYQT 112


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 289 DFVLQQFVTDLNEVSAGEH 345
           D V+QQ V  LN V AG++
Sbjct: 419 DIVIQQVVEQLNHVIAGDY 437


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 226 GLGPEKTSFFQALSIPTKISK 164
           G+G   TS FQ +S P+++SK
Sbjct: 345 GIGTNLTSDFQKVSNPSEVSK 365


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 147 MISIVPFEILVGIERAWKKEVFSGPR 224
           +IS  P + L+GI  AW  E  S  R
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRER 314


>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 121

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 35  YLLNNKTI*EWRDVQHVEKGGFRSSNLVTGLQDVYIVDDFNS 160
           YL N   I EW  V HV       +  V  + + +I  D NS
Sbjct: 69  YLKNCFRILEWEIVSHVGGNELLINRRVIDVNNFFICQDANS 110


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 87  RRVASEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 224
           RRV  +AP + P   +C  +   +   + +V I R  ++E+  G R
Sbjct: 155 RRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRG-QRELIIGDR 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,724
Number of Sequences: 5004
Number of extensions: 31760
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)