Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40008
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 111 7e-26
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 111 7e-26
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 33 0.017
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 5.9
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 25 5.9
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 25 5.9
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 5.9
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 5.9
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 111 bits (266), Expect = 7e-26
Identities = 55/88 (62%), Positives = 63/88 (71%)
Frame = +1
Query: 7 QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 186
Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8 QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64
Query: 187 GRILTGVVQKMKMQRTIVIRRDYFTTYP 270
GRILTG V KM RTI+IRR+Y P
Sbjct: 65 GRILTGTVVSTKMHRTIIIRREYLHFIP 92
Score = 89.8 bits (213), Expect = 2e-19
Identities = 36/53 (67%), Positives = 48/53 (90%)
Frame = +3
Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
LH++PKYNR+EKRH+N++ H+SP FR + GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 88 LHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 111 bits (266), Expect = 7e-26
Identities = 55/88 (62%), Positives = 63/88 (71%)
Frame = +1
Query: 7 QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 186
Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8 QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64
Query: 187 GRILTGVVQKMKMQRTIVIRRDYFTTYP 270
GRILTG V KM RTI+IRR+Y P
Sbjct: 65 GRILTGTVVSTKMHRTIIIRREYLHFIP 92
Score = 89.8 bits (213), Expect = 2e-19
Identities = 36/53 (67%), Positives = 48/53 (90%)
Frame = +3
Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
LH++PKYNR+EKRH+N++ H+SP FR + GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 88 LHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 33.5 bits (73), Expect = 0.017
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 342 IGDIVTIGECRPLSKTVRFNVLKV 413
+GD VTI CRP S T RF ++K+
Sbjct: 51 VGDAVTIQPCRPRSATKRFEIIKI 74
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 139 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 41
YP W+ +++ CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 240 HDSSLHLHFLNDAGEDAASDRNVTSEGTL 154
HDS+LH +FLN +D + T+E L
Sbjct: 31 HDSALHSYFLNARVKDVILESLRTTEEKL 59
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 5.9
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 22 FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 198
+ K T F N+ G K M K G+ A G T+ID P I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221
Query: 199 TGV 207
TGV
Sbjct: 222 TGV 224
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 336 VEIGDIVTIGECRPLSKTVRFNVL 407
V +GDIVTI C + R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 145 IDKKC-PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYFTTYPNTI 279
I+ KC + +S+ + L G+++++++ RT++ + + TY N I
Sbjct: 55 IESKCNELSSEISLLRKRL-GIIEEIEIPRTLIDQYECLVTYHNGI 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,410
Number of Sequences: 5004
Number of extensions: 38093
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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