Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40006
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 36 0.004
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 28 1.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 1.8
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 27 1.8
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 27 2.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 3.2
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 4.2
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 4.2
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch... 25 7.3
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 25 7.3
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 25 7.3
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.3
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 9.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 9.6
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.6
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 25 9.6
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 35.9 bits (79), Expect = 0.004
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 236 LYRHLISTGQGSAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVV 415
+Y + T + +A AIST ++ E ATA G ++A S +P + S+A++ +PV
Sbjct: 40 VYAYTTVTLEAAASAISTNG--AAKEAATAAGDAETTSSVAASVTPAASSSVAASVTPVA 97
Query: 416 S 418
S
Sbjct: 98 S 98
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 269 SAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLISTDGCSA 445
+AG TT SS+ + P S ++A S +PV + S+A++ +PV S D ++
Sbjct: 67 AAGDAETT---SSVAASVTPAASS---SVAASVTPVASSSVAASVTPVSSSAVVDSATS 119
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 27.9 bits (59), Expect = 1.0
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +2
Query: 152 IASKPQFNAAAYRPLIGHNKRHR*PVRLLYRHLISTGQGSAGAISTTARFSSIENATAPG 331
+AS + N ++ L G P + +H + GQ AI T+ SSI N
Sbjct: 153 VASASKDNVSSSSILQGSASSKLLPDQSARQHQVLVGQT---AIPTSEASSSINNTPLQA 209
Query: 332 KVSGLPAIARSASPVTTFS---IASAASPVVS 418
VS +P++TF+ +AS +SP +S
Sbjct: 210 PVSSFADQNAFTNPLSTFASPDLASVSSPSLS 241
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +2
Query: 251 ISTGQGSAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASP 409
IS+G S+ ST + SSI +++ S +I+ S+S +TFS AS +SP
Sbjct: 560 ISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSIS-SSSTSSTFSSASTSSP 611
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 263 QGSAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLISTD 433
Q ++ S++ + S T P S P ++ TT + + SP+VS STD
Sbjct: 240 QPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKSTD 296
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = -2
Query: 450 FRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAVVLIAPA 271
FRA HP V ++ D + +E + E D + + KP+T V+ E+ + VLIA
Sbjct: 648 FRASHPVVAKRVVKNDEGEPIE--IIAEYDASSSKKPKTFIQWVSRDK-ESNSPVLIAET 704
Query: 270 LPCPVLIRC 244
L +C
Sbjct: 705 RLFNNLFKC 713
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 291 LPDSPASKTPLRRARFPVYPQSPDPLHQ*PPFPSHLPHH 407
LP PAS T + +PV P SP + + S L H
Sbjct: 134 LPPFPASHTYMATPVYPVRPTSPKQIRELATQESRLAEH 172
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.4
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +2
Query: 251 ISTGQGSAGAISTTARFSSIENATA---PGKVSGLPAIARSASPVTTFSIASAASPVVSL 421
IS+ S+ T++ FSS+ ++T+ P S + SA+P +T S ++S VVS
Sbjct: 159 ISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSS 218
Query: 422 ISTDGCSA 445
S+ S+
Sbjct: 219 SSSPSSSS 226
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 258 PGRAARGQSALLPDSPASK-TPLRRARFPVYPQSPDPLHQ*PPFPSH 395
P +RG +L P P S+ + L + + P P P+ + Q PP PS+
Sbjct: 112 PALPSRGTPSL-PSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSY 157
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 264 RAARGQSALLPDSPASKTPLRRARFPVYPQSPDPLHQ*PPFPSH 395
R++ G S P + + R++ P+ P+ + PP PS+
Sbjct: 503 RSSNGNSDSASPPPVPRLSITRSQVSREPEKPEEIPSVPPLPSN 546
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 272 AGAISTTARFSSIEN----ATAPGKVSGLPAIARSASPVTTFSIASAASP 409
AG ++TT + E ATA G VSG + +A+ T +I S +P
Sbjct: 181 AGTVTTTVYSGTQEYTTTLATASGTVSGTVEVVDTAAGTVTTTIYSGTTP 230
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 272 AGAISTTARFSSIEN----ATAPGKVSGLPAIARSASPVTTFSIASAASP 409
AG ++TT + E ATA G VSG + +A+ T +I S +P
Sbjct: 253 AGTVTTTVYSGTQEYTTTLATASGTVSGTVEVVDTAAGTVTTTIYSGTTP 302
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 272 AGAISTTARFSSIEN----ATAPGKVSGLPAIARSASPVTTFSIASAASP 409
AG ++TT + E ATA G VSG + +A+ T +I S +P
Sbjct: 325 AGTVTTTVYSGTQEYTTTLATASGTVSGTVEVVDTAAGTVTTTIYSGTTP 374
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 272 AGAISTTARFSSIEN----ATAPGKVSGLPAIARSASPVTTFSIASAASP 409
AG ++TT + E ATA G VSG + +A+ T +I S +P
Sbjct: 397 AGTVTTTVYSGTQEYTTTLATASGTVSGTVEVVDTAAGTVTTTIYSGTTP 446
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 272 AGAISTTARFSSIEN----ATAPGKVSGLPAIARSASPVTTFSIASAASP 409
AG ++TT + E ATA G VSG + +A+ T +I S +P
Sbjct: 469 AGTVTTTVYSGTQEYTTTLATASGTVSGTVEVVDTAAGTVTTTIYSGTTP 518
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 272 AGAISTTARFSSIEN----ATAPGKVSGLPAIARSASPVTTFSIASAASP 409
AG ++TT + E ATA G VSG + +A+ T +I S +P
Sbjct: 541 AGTVTTTVYSGTQEYTTTLATASGTVSGTVEVVDTAAGTVTTTIYSGTTP 590
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 269 SAGAISTTARFSSIEN----ATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLIST 430
+AG ++TT + E ATA G VSG + A+ T ++ S + ++T
Sbjct: 648 AAGTVTTTVYSGTQEYTTTLATASGTVSGTVEVIEPAAGTVTSTVYSGTQEYTTTLAT 705
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 132 FTPRLAGMKRWYRWWHSAVAWHCCRKWCWKTAP 34
FTP + R Y W +A+ CCR+ + P
Sbjct: 214 FTPFSYAILRSYIWRFAALLTSCCRRIAYTKTP 246
>SPAC222.08c |||imidazoleglycerol-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.0 bits (52), Expect = 7.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -2
Query: 132 FTPRLAGMKRWYRWW 88
F P L RW+ WW
Sbjct: 207 FHPELTADNRWHEWW 221
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 225 QSGFSTDT*LAPGRAARGQSALLPDSPASKTPLRRARFP 341
Q+ FSTD+ RAA+ +SA P P + + ++ P
Sbjct: 728 QTKFSTDSLHIAKRAAKIESAAAPMDPMEQLEMEKSEGP 766
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = -1
Query: 157 RNKISNPMIYATVGGHEAMVSMVALG---CGVALLPEVVLE-NSPEPVRNRVMIL 5
RN S P++ VG H+ + VA G C + + +VVL +P V NR +++
Sbjct: 263 RNHNSQPLVCILVGSHDHASAAVAAGRRLCAIGI--KVVLRLLTPFNVDNRQLLM 315
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 269 SAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVV 415
S+ A S T+ SS+ ++ + S L A A SAS + S +S ASP +
Sbjct: 253 SSSASSATSSVSSVVSSAS----SALSASASSASASVSSSASSDASPAL 297
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 258 PGRAARGQSALLPDSPASKTPLRRARFPVYPQSPDP 365
P S LP SP +P+R + P SP P
Sbjct: 669 PEMDIENSSQNLPFSPMKISPIRASPVKTIPSSPSP 704
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 25 APVRGCFPAPLPATMPRHSRVPPSIPS 105
AP R P P PA+ P P IPS
Sbjct: 143 APPRPSIPPPSPASAPPIPSKAPPIPS 169
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 24.6 bits (51), Expect = 9.6
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 302 SSIENAT-APGKVSGLPAIARSASPVTTFSIASAASPVVSL 421
S++ NA+ + GLP A SAS T+FS S A+P SL
Sbjct: 282 SALPNASGSSSSFFGLPT-AVSASAGTSFSDISPAAPKASL 321
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 24.6 bits (51), Expect = 9.6
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +3
Query: 207 INGTVDQSG---FS-TDT*LAPGRAARGQSALLPDSPASKTPLRRARFPVYP 350
+NGT+D G F+ T R A+ Q +P P TPLR +YP
Sbjct: 52 VNGTMDIEGAPKFAPAKTSAEKKRGAKPQMRRVPIPPHRMTPLRNVWPKLYP 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,941
Number of Sequences: 5004
Number of extensions: 53635
Number of successful extensions: 183
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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