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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40005
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    31   0.12 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.88 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    28   1.5  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   2.0  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    26   4.7  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    26   6.2  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    26   6.2  
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    25   8.2  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 489 SVSVIQTEGRVDCSALIHELDRASRVC*YVTDC 391
           ++ ++Q  G ++      ELD ASRVC Y+T C
Sbjct: 206 AIDLLQELGAIEKVVPFVELDNASRVCLYITSC 238


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 532 VPSITCQLQLPRESTDFFGDLLYPYAEDIMKSDATKPLEEHK-FLLRCLWVYHH 690
           +PS    L++P ++ D F   L     +  + D+ K +  HK +   CL + H+
Sbjct: 323 IPSFISLLKIPLKTNDAFSKKLITMLSNFREGDSAKNIPTHKLWCTYCLCLAHY 376


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 385 MLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLC 531
           +L+   I     G ++  N CTTI  P  +++ D + + K+  +    C
Sbjct: 357 LLSCAPIQGHVAGIVDIPNSCTTIGVPMDIFEFDVSPNGKAKIIDLGSC 405


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 319 LIMPAHTP-WLPKSIGAPALPHRMLAICDISADPG 420
           ++ P   P W+P  +G     HR L +C +  D G
Sbjct: 15  MLQPFSNPLWVPTPVGRSGRKHRTLKMCIVLPDTG 49


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -1

Query: 601 DRVG-PRRNRSTHEAVEVGMLSMEHTSTPGPLNSSYPC 491
           D VG P R++  HE V V     EH ++    N   PC
Sbjct: 28  DLVGVPERHKVQHEIVAVATRDSEHRASSFAKNHCAPC 65


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 192 KVERGKEDDGSDTKIAPYTS 251
           K E+ K+D+G + KI  YTS
Sbjct: 118 KEEKAKDDEGLEKKITKYTS 137


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 216 DGSDTKIAPYTSVWSTASIGQLTVRNYSRYLMRTPHHAGTYPVVTEEHRSPGVTAQNAG 392
           DG  ++I+P   VWST         N  + +         YPVV+ +   PGV A+  G
Sbjct: 13  DGISSQISPIRDVWST---------NLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLG 62


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = +1

Query: 430 EFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLCVPSITCQLQLPRESTDFFGDLLYPYA 609
           +F+ EC TI       D DRN      K Q+           QLP  ST    + L PYA
Sbjct: 69  QFLKECQTIVRS--QLDQDRNTSKSPLKSQQ-----------QLPSSSTTQVSERLDPYA 115

Query: 610 EDIMKSDATKPLEEHKFLLR 669
           +++       P EE + +L+
Sbjct: 116 KEVQVQ--LSPPEEVQIVLQ 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,911
Number of Sequences: 5004
Number of extensions: 60417
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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