Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40003
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    30   0.36 
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    29   0.83 
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    27   1.9  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    26   4.4  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    26   4.4  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   7.8  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   7.8  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = -1

Query: 285  MGLYHQPMETCSLFSSRQDLLIASRYYCCLIRVN 184
            + +Y  P++T ++ +   ++  ++ +YCC++ VN
Sbjct: 2380 LSVYKLPIQTIAVNARNAEIAFSTGFYCCVVNVN 2413


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 280 THQCIRPALIVQYQKTHINYHSTMLVEGMMILHPLYTN 393
           TH+ +  A I+Q  + H N  S+ LVE M +    Y N
Sbjct: 209 THKVLLDANIIQLLRQHSNPFSSTLVELMTVFQQTYEN 246


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 297 PDTLMGLYHQPMETCSLFSSRQDL-LIASRYYCCLIRVNITRR 172
           PDTL  L  + M+ CS   S  D  +I  + +C  +   I +R
Sbjct: 118 PDTLQWLQRERMQKCSSIGSGNDFAMINPKLFCQFMAKEIEKR 160


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 325 THI--NYHSTMLVEGMMILHPLYTNPLMEEEHGGV 423
           TH+    ++T+ VE  ++ HPLYT+     E GG+
Sbjct: 103 THVLQQIYTTLYVE-FVVKHPLYTHVPPSAEEGGI 136


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 225 LIASRYYCCLIRVNITRRKLMLEHLEVDRVLD 130
           ++    YC ++++NI + KL+L   EVD + D
Sbjct: 175 VVPDEQYCSIVKINIGKSKLILAG-EVDCIWD 205


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 109 VENHVNKIQNSVNFKMFKHQLSSRN 183
           V  H N   NS N K++ +QLS +N
Sbjct: 156 VHPHTNTNANSNNLKVYANQLSQQN 180


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 127 KIQNSVNFKMFKHQLSS-RNVHSYQTTVVPRSNQQILSAAEQRASFH 264
           KIQN V F + ++ L++  +  S  T   P SNQQ L    Q  ++H
Sbjct: 23  KIQN-VEFSLDQNLLANLESSTSSSTRSSPASNQQNLEIVSQSEAYH 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,971
Number of Sequences: 5004
Number of extensions: 63738
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)