Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40002
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    27   2.8  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   2.8  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    27   2.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.7  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   4.9  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 362 RGQGCWFIIPNHANI-INVAY 303
           RGQ CW+++P   NI IN A+
Sbjct: 105 RGQPCWYLMPGVGNIAINDAF 125


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +2

Query: 533 YEYLKTFEVSDYIRAYEIFIACSSNTKKQFIMELTEFIGNHLSRQM 670
           ++YL T +   Y   +++  + +SNTK   I  L +++ NH+ R++
Sbjct: 424 FDYLITEDPESYNDTFDVIESVNSNTK---IPILPKWLSNHIPREI 466


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 226 PFQITKGTVTIKYNKILTIGLWTCI 152
           P ++T GT+ IKY   L  G+W  +
Sbjct: 177 PLELTTGTMMIKYWTNLNSGIWVTV 201


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 518  VLHILYEYLKTFEVSDYIRAYEIFIACSSNTKKQFIMELTE 640
            VLH + ++ + F +SDYIR   +      + + + ++ L E
Sbjct: 1649 VLHKIVDHREAFPISDYIRRAYVLSELEKSIRMEKLLGLVE 1689


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 329 HANIINVAYFQQYLFQ*TFIENSNVVFML 243
           H N+   +YF  Y    TF+EN+N++ ++
Sbjct: 279 HNNVRGCSYFYSYQAVCTFLENNNLLSVI 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,165
Number of Sequences: 5004
Number of extensions: 43348
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)