Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30033
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    80   2e-16
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    79   4e-16
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    79   7e-16
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    29   0.45 

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 35/56 (62%), Positives = 47/56 (83%)
 Frame = +1

Query: 493 GIPQLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 660
           GIP  K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VEDLIHEI+TVG
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVG 199



 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 28/48 (58%), Positives = 35/48 (72%)
 Frame = +3

Query: 261 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 404
           ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 66  EREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 24/43 (55%), Positives = 32/43 (74%)
 Frame = +2

Query: 377 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN 505
           + RK++QL RL QINNG+FV+ NKA   ML + EPY+ +G PN
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPN 147



 Score = 32.3 bits (70), Expect = 0.064
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 112 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRS 258
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRA 64


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 32/56 (57%), Positives = 47/56 (83%)
 Frame = +1

Query: 493 GIPQLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 660
           GIP L SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVG 198



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 27/44 (61%), Positives = 33/44 (75%)
 Frame = +2

Query: 377 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPNL 508
           ++RKVL+L RL +INN VFVR NKA   ML I EPY+ +G PNL
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNL 147



 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +3

Query: 258 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 404
           +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 64  RERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 32.7 bits (71), Expect = 0.048
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 112 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRSR 261
           PE +LK            ++  + ++ +  K ++E FKRAE ++  YR R
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQR 64


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 78.6 bits (185), Expect = 7e-16
 Identities = 34/56 (60%), Positives = 47/56 (83%)
 Frame = +1

Query: 493 GIPQLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVG 660
           GIP LK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +EDLIHEI+TVG
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVG 200



 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +2

Query: 377 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPNLR 511
           + RK++QL RL QINNGVFV+ NKAT  ML + EPY+ +G PNL+
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLK 150



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 29/48 (60%), Positives = 34/48 (70%)
 Frame = +3

Query: 261 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 404
           ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 67  EREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 31.9 bits (69), Expect = 0.084
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 91  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 255
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  EYR
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYR 64


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 496 IPQLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 621
           +P+LK+ REL+ K+   +     +   SN I+EK L  ++II
Sbjct: 422 LPKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDII 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,890
Number of Sequences: 5004
Number of extensions: 51999
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)