Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30026X
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    29   0.33 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   0.57 
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    27   0.99 
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    27   1.3  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   2.3  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   2.3  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   4.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   5.3  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   5.3  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    24   7.0  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    24   7.0  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    24   9.3  

>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 28.7 bits (61), Expect = 0.33
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +1

Query: 46   RGDNLIQLYNNFLTTFESKINPLSLVEIIAH--IVEQYVNKRDAVTFLEKVETKVKMNDE 219
            RG N+I L     TT+ES+ NP SL+  + +       +   D ++        VK+N  
Sbjct: 861  RGGNIIPLQQPGYTTYESRNNPYSLLIAMDNNGFASGSLYIDDGISMQTNSSLSVKLNSN 920

Query: 220  ALALCKVLQG 249
            +  +  V+ G
Sbjct: 921  SNTITCVVSG 930


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 246  RTNYIEQLNDYDAAEKIIEHLESTLEDADGVTPVH 350
            + NY+ ++ DY   E + + L+S L+    + P H
Sbjct: 3056 KQNYVNRMVDYKLRESVKDQLKSLLDGFSDIIPSH 3090


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 115 SLVEIIAHIVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQITLN 264
           S+  + A   E++   + +++ LEK   KVK  D  LA+  VL  ++ LN
Sbjct: 590 SIYLLYADFEEKFGKAKRSISILEKAADKVKTADR-LAIYNVLLVKVALN 638


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 46  RGDNLIQLYNNFLTTFESKINPLSLV 123
           RG N+I +    LTT E+K NP  L+
Sbjct: 858 RGGNIIPMQKPSLTTHETKQNPYDLL 883


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 267 LNDYDAAEKIIEHLESTLEDAD 332
           +  YDA +K IE LES + D D
Sbjct: 856 MEQYDARKKEIEELESKMSDFD 877


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 46  RGDNLIQLYNNFLTTFESKINPLSLV 123
           RG +++ +    LTT+ES+ NP +L+
Sbjct: 836 RGGSVLPMQQPSLTTYESRQNPFNLL 861


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 327 HLRVYFLNVQLFSRLHHNHSAVQCNLSL*H 238
           HL   FL+ +LF      H +VQC+  L H
Sbjct: 189 HLFPQFLSAELFESASTVHRSVQCDNCLAH 218


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 82  LTTFESKINPLSLVEIIA 135
           + T ESKIN LSLV+I++
Sbjct: 443 VNTRESKINALSLVQILS 460


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 67  LYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQ 246
           + ++ L   ESKI+ L +   +  +V QYV     + F E     + +    + LCK LQ
Sbjct: 575 MIDSSLQLLESKISDLKVRLALIDLVSQYV-----ILFYEPDFDSIFLRRVLIILCKKLQ 629

Query: 247 GQIT 258
            + T
Sbjct: 630 EEPT 633


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 366 TYKIVRELESHHQH 325
           +YK VRE+ESH  H
Sbjct: 476 SYKYVREIESHRIH 489


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 28  KNPALQRGDNLIQLYNNFLTTFESKIN 108
           + P L   ++++QLYNNF    E  ++
Sbjct: 733 RQPLLSLTNDILQLYNNFYVLCEETMD 759


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 4   TLKLQEFVKNPALQRGD 54
           T ++ EFV+N  LQRGD
Sbjct: 480 TPEVPEFVQNRVLQRGD 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,241
Number of Sequences: 5004
Number of extensions: 29134
Number of successful extensions: 119
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)