Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10406
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.2  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   5.5  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   5.5  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    25   9.7  

>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 309 LEYSNSIQELERLPMLAAKTLFQLHI 232
           LE+ NS   L+ + +LAAK L+QL +
Sbjct: 516 LEWINSFSSLKYVGLLAAKDLYQLEL 541


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -2

Query: 773 SLLYHYGAMRFMVSCILISVGKKVGRRKNN---VYKAICYLWVKLWIGRFCINIYNILNT 603
           S + + G+++   S +L  +G  V  +K     +YK +   + + WI  + ++   ILN 
Sbjct: 691 SFILNSGSIKEFFSVLLEYLGSNVLHKKTTSLAIYKELFVYFTRDWITSYGVDFDEILNV 750

Query: 602 L 600
           L
Sbjct: 751 L 751


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = -2

Query: 218 FYAIENVNVKKLTLTHSHWW-------*DLL*VRAGGYHRPAYFYRESVI 90
           FYA   + V++L  T  H+W        D L VR  G+   AYF+  S +
Sbjct: 188 FYAFRPLVVRRLPFTLMHFWNIIVQFSFDYLVVRYVGWRALAYFFMSSFL 237


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 794 RHRKSGLSLLYHYGAMRFMVSCILISVGKKVGRRKNNVYKAICYLWVKL 648
           R+RK+   L   YGA  + V   LI   +   R K  V  A+ +++  L
Sbjct: 173 RYRKNVADLQKRYGAFEYDVEAELIRYKELAQRLKPFVIDAVAFMYEAL 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,390
Number of Sequences: 5004
Number of extensions: 56188
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)