Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10403
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    29   0.58 
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    27   4.1  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   7.1  
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ...    26   7.1  

>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 642 IGSATH*KNPARNEGCVYGFIRSS--SPSSQATG*TRTVTGPAYRKVSLQAS 493
           + S TH     RNE     F ++S  SPSS   G + TVT  A  K+  +AS
Sbjct: 136 LDSHTHPPKRVRNEDDSLTFSKTSPVSPSSLKDGASNTVTNDASNKIKSEAS 187


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 7   WCYMISALHYLSYKTCLHNFELF 75
           W ++ S L Y +Y +CL+NF  F
Sbjct: 207 WGFVRSFLPYYTYGSCLYNFMAF 229


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 438 FQSQKKRKLLYLHRAPNAARYQSIS 364
           + S K+ +L+Y+ +  NAA YQ  S
Sbjct: 457 YDSAKRSRLVYIEKITNAACYQEYS 481


>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
           Taf11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 497 PRF*RRICHSAQQTPWSGAHSKA 429
           PRF R + +    +P +GAH+KA
Sbjct: 11  PRFQRSMSYDQSNSPTAGAHAKA 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,799
Number of Sequences: 5004
Number of extensions: 53766
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)