Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10399
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    62   8e-11
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    35   0.008
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    29   0.39 
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    27   2.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   4.8  

>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 61.7 bits (143), Expect = 8e-11
 Identities = 34/85 (40%), Positives = 44/85 (51%)
 Frame = +1

Query: 4   AAGELPLTTLRRYSAYXXXXXXXXXXXXXXXXXXXXYVLMRTGALQHERQADKRLYIPIT 183
           A GE+P    RRY  Y                    +V +R    Q E+ ++ R  IPIT
Sbjct: 543 AIGEIPFDKFRRYINYCRHKCAPNLDAEAAEKLSSQFVAIRKRVHQSEQDSNSRSTIPIT 602

Query: 184 VRQLEAIVHISESLAKMQLQPFATK 258
           VRQLEAI+ I+ESLAKM L P A++
Sbjct: 603 VRQLEAIIRITESLAKMSLSPIASE 627



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
 Frame = +3

Query: 234 AVATVCDEAHVNEALRLFQVSTLDAAMTGSLAGAEGFTTEEDHEMLTRVEKQLKRRFAVG 413
           +++ +  EAH  EA+RLF  STL AA   S          E  E + ++E  L++R  +G
Sbjct: 620 SLSPIASEAHATEAIRLFLTSTLAAATQSS---------PEVTEEVKKIEASLRKRLPIG 670

Query: 414 SQVSEQTIIQDFLR-QKYPERAILKVIHMM 500
            Q S + +I++++    Y + A+   + ++
Sbjct: 671 FQASYRMLIREYVNGHGYSQHALEMALQIL 700


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +1

Query: 175 PITVRQLEAIVHISESLAKMQLQPF 249
           PITVR LE+ + +SE+ AKMQL  F
Sbjct: 768 PITVRHLESAIRLSEAFAKMQLSEF 792


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +1

Query: 148 RQADKRLYIPITVRQLEAIVHISESLAKMQLQ 243
           R ++KR  I  T RQLE+++ +SE+ AKM L+
Sbjct: 762 RASEKR--ITATTRQLESMIRLSEAHAKMHLR 791


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/18 (55%), Positives = 17/18 (94%)
 Frame = +1

Query: 178 ITVRQLEAIVHISESLAK 231
           ITVRQLE+++ +SE++A+
Sbjct: 696 ITVRQLESMIRLSEAIAR 713


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 461  FLSQEVLNDCLFRNLRAHSEPAL*LFLDASQHFVIFFCCKTFSS 330
            F S  VLND LFRN   +S+P   L +       +F CC  F +
Sbjct: 1130 FPSPSVLNDTLFRNRINNSKP---LGVFRIHDPSLFACCYQFGA 1170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,488
Number of Sequences: 5004
Number of extensions: 28204
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)