Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10394
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    30   0.21 
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    29   0.37 
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   1.5  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   6.0  

>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 222 PHVIVAVRGSYVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 380
           P  I  + G ++  TLTA+L+      T L+T L+  +    PP    L++S+
Sbjct: 125 PDSIEGIPGCHIIYTLTASLERATQPPTNLETALQFRVIRTIPPNSLDLMHSV 177


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 418 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 287
           HNP   L  L +SRE  SL     D   + R TL  +S+LVS  +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 195 KEALDDDNKPHVIVAVRGSYVTRTLTANLKPLR-TSLTRLDTM 320
           +E   + N+ +VIV + G +V    T  LKPL   S ++ DT+
Sbjct: 59  EEVSQEPNQKNVIVGISGLHVVNLPTLTLKPLYWPSASKNDTL 101


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 195 KEALDDDNKPHVIVAVRGSYVTRTLTANLKPLRT 296
           KE    D+K H++VA  GS     LT  +K L T
Sbjct: 22  KERQLTDSKYHILVAATGSVAAIKLTLIVKSLLT 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,434
Number of Sequences: 5004
Number of extensions: 37072
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)