Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10390
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 117 2e-27
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 33 0.056
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.8
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.8
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 4.9
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 26 4.9
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 4.9
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 26 4.9
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 8.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 117 bits (281), Expect = 2e-27
Identities = 54/98 (55%), Positives = 73/98 (74%)
Frame = +2
Query: 221 GKKHYDAQSHQNHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 400
GK ++ + +++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP A
Sbjct: 54 GKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNA 113
Query: 401 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTLK 514
IAPL V +PA NTG+ P KTSFFQAL IPTKI++GT++
Sbjct: 114 IAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIE 151
Score = 86.6 bits (205), Expect = 3e-18
Identities = 40/83 (48%), Positives = 55/83 (66%)
Frame = +1
Query: 484 PYQNFKGYFEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 663
P + +G EI +DVH++ KVG SEA LLNMLNISPF+YG+ V +YD G +F+PEI
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEI 201
Query: 664 LDIKPEDLRAKFQAGVANVAALS 732
LD+ EDL + + + A+S
Sbjct: 202 LDVSEEDLIGHLLSAASIITAIS 224
Score = 63.3 bits (147), Expect = 3e-11
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = +3
Query: 84 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIK 254
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 32.7 bits (71), Expect = 0.056
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 251 QNHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIP 427
+ H +N L KLL G VG +FT EV E+ VQ AR GA+AP + VIP
Sbjct: 83 EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138
Query: 428 A 430
A
Sbjct: 139 A 139
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 357 NCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQR-VL*NHQR 524
+ +R++ R L+ P +S PP TPA+ + + ++P+ R +L NHQ+
Sbjct: 79 SAFRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILENHQQ 135
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 357 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 259
L +T +S + PTLP + + S +G+LSR
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSR 67
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.9
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -3
Query: 453 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 283
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 282 SRAGL 268
S L
Sbjct: 195 SEEEL 199
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -1
Query: 635 SYTCLTTRPYENGEMFNMLRRLASEAPTLSPGFKMCTSLMISKYPLK--FW*GWKELGRK 462
SY+ T PY + ++++ S + G L+IS +P++ FW G L
Sbjct: 268 SYSSGETNPYFSRLYYSIILTFVSVIAAFTIGIIQMLMLIISVHPMESTFWNGLNRLS-D 326
Query: 461 RFSLDRGRCCG 429
+ + G CG
Sbjct: 327 NYEIVGGCICG 337
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 26.2 bits (55), Expect = 4.9
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = -3
Query: 720 YISNSSLELGTEILWFDVQNFRCKNSSRIIYLLNNKTI*EWRDVQHVEKVGFRSSNLVTG 541
Y+ N ++ TE + + +N+RC R I +T+ + V ++ RS+ LV+G
Sbjct: 943 YVQNYRIQKLTEEISY--KNYRCPFLCRNIE--KERTVEQL--VSRLQTKLLRSAELVSG 996
Query: 540 LQDVYIVDDFKV 505
LQ +D FK+
Sbjct: 997 LQAKLCLDSFKL 1008
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 392 PGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTK-ISKGTLKSSTMYTS*SPVTRLEL 562
P AI + V + N E T +ALS K + G +KS +YT PVT ++
Sbjct: 470 PAAIQEETSVSKSFNIIAKCEDTGSMEALSDYLKPLQFGKVKSRVLYTGVGPVTETDI 527
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 8.5
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 168 QQMQQIRISLRGSSIV-LMGKNTMMRKAIKTTWTTIQPSRNCCHTSRATLASCSPAETSL 344
+Q+Q+ S S I L GK ++ + + +T IQPS + + +A PA T++
Sbjct: 504 RQIQKAESSEDTSEIESLQGKLSLPQ--VSSTQQEIQPSSSVPEAASNEIAEKEPAVTAI 561
Query: 345 RSVT 356
S+T
Sbjct: 562 ESIT 565
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 185 PYLATWLQYRAHGKKHYDAQSHQNHLDNNPALEK 286
P+L +L + +G HY +N L NNP L +
Sbjct: 2482 PHLLVYLS-KTYGLHHYCILLLENSLQNNPGLSE 2514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,546
Number of Sequences: 5004
Number of extensions: 73238
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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