Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10389
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.4  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.5  

>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 742 LYHSV*VSSRWSNEDV-SQNLSPDRKRDPLRRSNEKLSGIVFTSE*IYQYPMDTNQYQNR 566
           +Y S   S + S++ + + +   D  R   RR ++    + FT E    +     +Y N+
Sbjct: 197 IYDSNIASPKESSDAIDADHAMIDESRSTQRRKSKPKKHVAFTDEYQVAFSDKPGKYFNQ 256

Query: 565 PMQF 554
           PMQ+
Sbjct: 257 PMQY 260


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 152 RAMCPAHCHFNEMDRRSIEVRGDPLYAD 235
           R +   H +F E+ R   +  GDPL+++
Sbjct: 483 RDLAAKHPYFEEVKRYGTDANGDPLWSE 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,808
Number of Sequences: 5004
Number of extensions: 72133
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)