Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10388
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   132   4e-32
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   132   4e-32
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    46   5e-06
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          27   1.4  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    27   1.8  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    27   2.4  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    26   3.1  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   4.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   5.5  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.2  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   9.5  

>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  132 bits (318), Expect = 4e-32
 Identities = 58/66 (87%), Positives = 62/66 (93%)
 Frame = +3

Query: 246 LEKMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 425
           L  MII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSS
Sbjct: 88  LRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSS 147

Query: 426 RFIPLK 443
           RFIPLK
Sbjct: 148 RFIPLK 153



 Score = 84.6 bits (200), Expect = 8e-18
 Identities = 41/76 (53%), Positives = 50/76 (65%)
 Frame = +1

Query: 25  LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 204
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 14  LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73

Query: 205 EAPPNEKPEIVKTHLR 252
           EAP NEKP  VKTHLR
Sbjct: 74  EAPLNEKPATVKTHLR 89


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  132 bits (318), Expect = 4e-32
 Identities = 58/66 (87%), Positives = 62/66 (93%)
 Frame = +3

Query: 246 LEKMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 425
           L  MII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSS
Sbjct: 89  LRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSS 148

Query: 426 RFIPLK 443
           RFIPLK
Sbjct: 149 RFIPLK 154



 Score = 85.4 bits (202), Expect = 5e-18
 Identities = 41/76 (53%), Positives = 50/76 (65%)
 Frame = +1

Query: 25  LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 204
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 15  LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74

Query: 205 EAPPNEKPEIVKTHLR 252
           EAP NEKP  VKTHLR
Sbjct: 75  EAPLNEKPATVKTHLR 90


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = +3

Query: 261 IVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 380
           I+P MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 59  ILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 157 KRKPMALVKKLRRAK---KEAPP-NEKPEIVKTHLRK*SSFPRWSVQ 285
           +R  + L + L RA    K APP N+K  + +TH  K S   +WS++
Sbjct: 91  ERNRLQLKRSLERAGINIKFAPPSNKKRRLNRTHYDKKSHLIKWSIE 137


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  SRKSVFSGSSLTGELISISSLICPMSNSWN 115
           S+ +  +   +TG +++ISS +C + N +N
Sbjct: 145 SQAAALASKDITGTIVAISSELCAVENQFN 174


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 436 GMNLELCVAPIPGLPCFTGLYVTENS 359
           G+N+ LCV   PG P  TG  ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 427 LELCVAPIPGLPCFTGLYVTE 365
           LELC    PG+P   G++  E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = +3

Query: 270 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 419
           E+  + VG+YNGK  F +  + P+ +      H L E ++   KP++   PG+  TH
Sbjct: 23  EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 300 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 386
           N +TF+  E   E     + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 350 MADHLRLDFNLVKSFSVVNADN*TDHLGNDDHFLK*VFTISGFSFGGA 207
           + DH +LD +L K  S ++    T  L ND   L    T  G    G+
Sbjct: 721 LLDHSKLDDDLEKFASTLDPIKTTPDLANDSSLLNWANTDQGMDIEGS 768


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 154 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 249
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,663
Number of Sequences: 5004
Number of extensions: 35878
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)