Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30098
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   6.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   8.0  
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    25   8.0  

>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 RVGSQEAYYQFFLLHDVIPSPWKSIVNIC 357
           +VG+    Y FF+L    P P+ SI  +C
Sbjct: 492 QVGNAPPDYLFFILDKNSPEPYGSIKRVC 520


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 272 VWAHKKLTTSFFYYTMLFLHRGSQS*TSVKYVF 370
           +WA   L     YYT  F H+G  +  +V Y F
Sbjct: 236 IWALGVLFYKLCYYTTPFEHQGLAAIMNVSYAF 268


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 209 IVTVDYPLFRGRIRQWGIYPPVWAH 283
           I+T+ YP+  G +  W     +W H
Sbjct: 64  ILTLKYPIEHGIVNNWDDMEKIWHH 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,236
Number of Sequences: 5004
Number of extensions: 62527
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)