Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30086
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    64   2e-11
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.4  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   2.4  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   7.5  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.5  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    26   7.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.9  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   9.9  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
 Frame = +1

Query: 181 PEETRLKVFMSCNLYYGYVPEVRQKRKQAFASVCLFGEDNNSTISGVWVWRGKELV--FP 354
           PE+ +  VFM+ NL  G+   +   RK  F    + GE+ ++TI+G +V +G + V  F 
Sbjct: 304 PEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFD 363

Query: 355 LSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIFK 507
           ++ DW     SY + KLD +  E K  ++D ++W+    +GR+   GK+ K
Sbjct: 364 VAPDW----GSYTFTKLDINKPEDKAFIEDAWAWD-KPIEGREVADGKVCK 409


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 370 QVDYESYDWKKLD 408
           QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 338 RSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTR 493
           R S S  R+I    T P   R++    ++ +N   T     EP +TVE  TR
Sbjct: 531 RKSSSILRMISHSNTDPVELRSYNQSLQQNKNNEPTAVVPLEPEQTVELETR 582


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 239 QRLDKSANRLSHPSACLVKTTIPPSPECGCGAERSSCSR 355
           Q++++   ++S+ +   +  +I PSPE  C  E+  C++
Sbjct: 318 QQMNELWEKVSNGAPLSLDMSIDPSPESTCFTEKRRCAK 356


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 191  VSSGVIWYSGIPKW 150
            V +G+ W+SG+P W
Sbjct: 1218 VDAGLCWFSGMPNW 1231


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/55 (20%), Positives = 30/55 (54%)
 Frame = +3

Query: 501 IQVMPTNVQPMYTHFIQ*L*KTLQKRNIQM*IGGCWQFSELSSIYRIFIKTSVIN 665
           ++ +P N + +Y H ++ +  +L ++++   IG     ++LSS   I +   +++
Sbjct: 5   LRTLPKNAKVIYEHCLKQIPNSLSQQDLVEAIGASISVNDLSSALNILLSRRLLD 59


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 20/101 (19%), Positives = 46/101 (45%)
 Frame = +2

Query: 287 LVKTTIPPSPECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEP 466
           +++TT+  S      +  SS S        TTSP++  +    +    + S ++S  +  
Sbjct: 122 VLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSS--SSSSSSSSSSSSSSSSSSS 179

Query: 467 TKTVESSTRARYSSNADKRPANVYTFHTITIKNFTKKKHSN 589
           + +  SS+ +  SS++    ++  +  ++ I + T   HS+
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSS 220


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 443 TTSRGTEPTKTVESSTRARYSSNADKRPANVYTFHTITI 559
           +TSR +  + T ESS      S  +   +NV TF+  TI
Sbjct: 299 STSRKSSYSSTTESSNFENLESPRNLHDSNVSTFNNTTI 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,781,536
Number of Sequences: 5004
Number of extensions: 87048
Number of successful extensions: 256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)