Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30085
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.5  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    27   2.5  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   2.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.4  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   5.9  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   7.8  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   7.8  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   7.8  

>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 364 SESQLESDNEDRRTHLSK--RKHLDSDDSDETYTPFAEQTSR 483
           +E + + D++D    ++K   +H++ DDS E + P  E+  R
Sbjct: 733 AELRGDEDDQDENDQVTKVEEEHMEDDDSVEEFDPIIEERQR 774


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 652 KNQSTES*ETRI-MEAFQKIQNGPGKLQGTTRLEQLGNDLGRK 777
           K Q T   E ++ + A +K+Q G GK QGT    Q G DL  K
Sbjct: 50  KPQRTRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATK 92


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 265 NDLPLQKTELDLNSVVN--IISPCKNNDYEPVTPKSESQLESDNEDRRTHLSKRKHLDSD 438
           ND   + TE ++ S +N  I    +NN  E +   + S   S+N  +++ ++K++  D +
Sbjct: 671 NDDHFEVTE-EITSTINSKISEKQENNVAETILEVTSSPKSSENSQKQSEITKKRGRDEE 729

Query: 439 D 441
           D
Sbjct: 730 D 730


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 223  IRKRKVLTCI*ELHNDLPLQKTELDLNSVVNIISPCKNN 339
            + K   + C+ E+HN LP Q   +  + V N  +  KNN
Sbjct: 3983 LHKNSRIVCLSEIHNQLPHQLLCISRSIVFNKQTSFKNN 4021


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 164 YEFLRQWKVLFRTCAFLLFVKLHHHTDR 81
           +++ + W  +F TC++LL    HHH  R
Sbjct: 21  WDWAKNW--VFWTCSYLLNFLYHHHCSR 46


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 274 PLQKTELDLNSVVNIISPCKNNDYEPVTPKSESQLESDNEDRRTHLSKRKHLDSDD 441
           PL +T +   +  ++    +NN+  P  P   S   S + D    +   KH DS+D
Sbjct: 67  PLDETHIATKASASL----RNNNVSPHIPSPSSFSSSSSSDLDKSMLDEKHPDSED 118


>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 112

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 352 VTPKSESQLESDNEDRRTHLSKRKHLDSDDSD 447
           VTP  E   E  N+ R T   KRK    +D D
Sbjct: 70  VTPSEEKIHEMINQKRETKKRKRKQKKKNDDD 101


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 792 VC*ISFPSQIIAQLFQPGSSLE-FPWSILDLLESFHYSCLSTLCTLILE 649
           +C  S  S+   +LF+   SL+ F  S+ DLL S H+S   T  +LI++
Sbjct: 105 LCRFSNCSEDEIRLFKQHQSLDSFLLSLFDLLCSHHFSVEFTSISLIIK 153


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = +1

Query: 301 NSVVNIISPCKNNDYEPVTPKSESQLESDNEDRRTHLSKRKHLDSDDSDETYTPF 465
           N  V  + P   ++++PV  KS     S N      + + K+ +   S   Y PF
Sbjct: 162 NPAVPFLPPLYTHNHDPVDHKSLKNFYSSNYFAEKLIDQLKNREKSQSFFAYLPF 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,475
Number of Sequences: 5004
Number of extensions: 74760
Number of successful extensions: 249
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)