Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30084
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 161 1e-40
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 105 5e-24
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 102 6e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 75 1e-14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.66
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 2.0
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.6
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po... 27 3.5
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.5
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 4.6
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 4.6
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 8.1
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.1
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 8.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 161 bits (390), Expect = 1e-40
Identities = 79/136 (58%), Positives = 94/136 (69%)
Frame = +3
Query: 255 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKES 434
LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+E+
Sbjct: 65 LVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREA 124
Query: 435 ESCDCLQGFQLXXXXXXXXXXXXXXXXXXXXVKSTPTES*THYSVVPSPKVSDTVVEPYN 614
E+CD LQGFQL + P +SV P+PK SDTVVEPYN
Sbjct: 125 EACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYN 184
Query: 615 ATSLSSPA*LKNTDET 662
AT LS ++N+DET
Sbjct: 185 AT-LSMHQLVENSDET 199
Score = 113 bits (271), Expect = 3e-26
Identities = 46/64 (71%), Positives = 55/64 (85%)
Frame = +1
Query: 64 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 243
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 244 PRAI 255
PRA+
Sbjct: 61 PRAV 64
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 105 bits (253), Expect = 5e-24
Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Frame = +3
Query: 246 PRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 422
PR + VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+ +
Sbjct: 67 PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERI 126
Query: 423 RKESESCDCLQGFQLXXXXXXXXXXXXXXXXXXXXVKSTPTES*THYSVVPSPKVSDTVV 602
R+ +++C LQGF + +S +SV P+P+VS +VV
Sbjct: 127 RRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVV 186
Query: 603 EPYNATSLSSPA*LKNTDETLL 668
EPYN+ L++ A L N+D T +
Sbjct: 187 EPYNSV-LTTHATLDNSDCTFM 207
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = +1
Query: 64 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 225
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 226 SGGKYVPRAI 255
GK+VPR+I
Sbjct: 61 GQGKFVPRSI 70
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 102 bits (244), Expect = 6e-23
Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Frame = +3
Query: 246 PRHL-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 422
PR + VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D +
Sbjct: 63 PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKI 122
Query: 423 RKESESCDCLQGFQLXXXXXXXXXXXXXXXXXXXXVKSTPTES*THYSVVPSPKVSDTVV 602
R+ +++C LQGF + +S +SV P+P+VS +VV
Sbjct: 123 RRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVV 182
Query: 603 EPYNATSLSSPA*LKNTDETLL 668
EPYN+ L++ A L D T +
Sbjct: 183 EPYNSV-LTTHATLDLADCTFM 203
Score = 56.4 bits (130), Expect = 4e-09
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 64 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 237
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 238 YVPRAI 255
YVPR+I
Sbjct: 61 YVPRSI 66
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 74.9 bits (176), Expect = 1e-14
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Frame = +3
Query: 255 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVVRK 428
L+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D++ +
Sbjct: 66 LIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDR 124
Query: 429 ESESCDCLQGFQLXXXXXXXXXXXXXXXXXXXXVKSTPTES*THYSVVP-SPKVSDTVVE 605
E++ D L+GF L P + YSV P S VSD VV+
Sbjct: 125 EADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQ 184
Query: 606 PYNA 617
PYN+
Sbjct: 185 PYNS 188
Score = 68.9 bits (161), Expect = 7e-13
Identities = 29/63 (46%), Positives = 44/63 (69%)
Frame = +1
Query: 67 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 246
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 247 RAI 255
RAI
Sbjct: 63 RAI 65
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.66
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 512 LISKIRE--EYPDRIMNTLLSSPLAQSIRHCRRTIQC 616
L+S +R YP+R T L S + QS+ HC + C
Sbjct: 197 LLSALRNLGHYPERASKTPLESQIIQSLFHCLNSENC 233
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 366 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 455
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 588 SDTVVEPYNATSLSSPA*LKNTDETLLHRTTKGSITTS 701
+D + P + L + + DETL+H ++GS TTS
Sbjct: 289 ADKIPRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTS 326
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 103 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 204
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 467 YTFPRWRHRVRYGHLLISKIREEYPDRIMNTLLSS 571
Y R + HLL+ + +PD+I+ TL S+
Sbjct: 121 YYLDRLKFEEAINHLLLPDVLPNFPDKIIETLYSN 155
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 297 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 398
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 231 RQVRAPRHLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGN 359
R+V AP+H GT RS +FR ++ FGQ GN
Sbjct: 486 REVFAPKH-ARRRLGTRFHSRSSHRPSVFRDNSVAFGQLDNGN 527
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 47 KITYTK*GKSFIYRPANVV 103
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 318 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDC 449
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 463 NLHIPSVAAPGPVWAPPHLKDP*RVPRQNHEH 558
N+H PS A +++P +P+QNHEH
Sbjct: 623 NIHHPSANLLDASAALNPVQNPLLMPQQNHEH 654
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 355 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 260
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,038
Number of Sequences: 5004
Number of extensions: 54610
Number of successful extensions: 166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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