Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30083
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    30   0.36 
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    30   0.48 
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    28   1.9  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    27   2.6  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    26   7.8  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   7.8  

>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 597 EQEVYTIPAELKPTNLKQIYVLLER---SKKRIRI*YVSTESRRLQ 725
           EQE    PA L PT LK++ V LE+   + + +RI Y ++  R ++
Sbjct: 71  EQEAQEEPASLTPTELKRMVVRLEKTINNNQELRIKYSTSPQRFIE 116


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +1

Query: 181 EAMKCKEENCEVGVVLERNSLIVLSLTRPSSASAGGIGTIPSSAGKSHRYASASCVRGRS 360
           E    +E N     + +  S + L +    SAS    GT+ S++ K    + A   R  S
Sbjct: 192 ERQLTEESNVNENAISQNPSTVQLGV----SASTSNFGTLKSTSKKPSDKSWAEYFRSFS 247

Query: 361 TLLPYI 378
           TLLPY+
Sbjct: 248 TLLPYL 253


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 635 WLELSRDRVNFLFRPSFSLVVSNDHGYS 552
           WL       N L+ P   L V +D+GYS
Sbjct: 186 WLNYVSTNPNLLYDPELQLFVESDYGYS 213


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 626 LSRDRVNFLFRPSFSLVVSNDHGYSCEDCG 537
           +SR R   ++   FS+ + N H Y C  CG
Sbjct: 253 ISRCRRCRMYINPFSIFIDNGHRYRCNSCG 282


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 638 CWLELSRDRVNFLFRPSFSL 579
           CWL L  + VNF+  P F +
Sbjct: 27  CWLRLMPETVNFVIVPDFRM 46


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 724 KGRLGLKALNVKPKLQMGC*QNSYPTLNVKGNL 822
           +G+L LKA N K K Q+G  Q + P  ++  NL
Sbjct: 26  EGKLPLKADNPKKKPQLGTIQANQPIPSIFDNL 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,748
Number of Sequences: 5004
Number of extensions: 55536
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)