Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30081
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    31   0.18 
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    29   0.72 
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.3  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    28   1.7  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    26   6.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   6.7  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    26   6.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   6.7  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   8.8  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 254 KQSKSYNDETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEK 394
           K SK  +D  + +    ++A R+    E+T+RE E +I   K+ +EK
Sbjct: 557 KSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFKEEVEK 603


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 11/55 (20%), Positives = 32/55 (58%)
 Frame = +2

Query: 251 VKQSKSYNDETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQE 415
           +K+ K+ ++  + +    S++  + +D+E   +++   + NIKQ  +++  L++E
Sbjct: 136 IKRRKTESNSQESVDSSNSESSDEESDSEDETQQLLRELENIKQERKREQMLQEE 190


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 503 IFVLPSGTYTVCIHILCLHIQSNHHPR 423
           IFV P  + + C+  +CL + SN +PR
Sbjct: 173 IFVPPKRSSSSCVTYVCLFLDSNSNPR 199


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -3

Query: 608 QAISICVCSSTEYLLFSGPAHSPQLPRPTSIPPSWIFVLPSGTYTVCIHILCLHIQSNHH 429
           + I +  C ST+ +        PQ  R  +I     F+   G    C++ L  +++S+H 
Sbjct: 534 EVIDVVSCLSTDSMFLF-----PQEKRDEAIEARLKFLHSEGDLLTCLNALRQYLESSHD 588

Query: 428 PRKQ 417
            RKQ
Sbjct: 589 SRKQ 592


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 530 LVIGENGQVLKTINTLLMNIHKWKLLAGMVPVRNNQLVNVQPVD 661
           L+  ++ ++ K +    M+I   +L AGM+  RN   +N+Q  D
Sbjct: 115 LICNKSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHD 158


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 710  TTGKGFSYGMVILGFPSPQVE 648
            T+G+GFSY  +++  P  Q+E
Sbjct: 1278 TSGQGFSYSRLLVYLPPSQIE 1298


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 673 LVSQVHRLNINQLVVSNWDHSGKQFP 596
           L + +HRL +   +V N+D  G++FP
Sbjct: 380 LSANIHRLGVRNAIVCNYD--GRKFP 403


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +2

Query: 335 ERTVREIE-SNIRNIKQNLE-KDYGLEQEFASLDGDCFEYEDKEYVYKLCMFQKVTQKSK 508
           + +V+E+  +N+ +++ +++ K +          G  FEY+DK Y     M ++V Q+S 
Sbjct: 643 DMSVKELGLTNVDSMRSSVDIKQFFSFSSDRKASGAIFEYKDKYYFVVKGMPERVLQQST 702

Query: 509 MVV 517
            V+
Sbjct: 703 SVI 705


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 555 TCPFSPITKTYLHTTILDFCVTF 487
           TC FSP TK+     + +FCV +
Sbjct: 68  TCAFSPSTKSIAAGGLNNFCVVY 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,366
Number of Sequences: 5004
Number of extensions: 66358
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)