Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30079
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    28   2.0  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   4.6  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   8.1  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    26   8.1  

>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 388 GSCPLGSVCRHRPCPNHRRLP-FRLHRCPPGEGC 290
           G CPLG +CR +     R  P +    CP G  C
Sbjct: 117 GFCPLGPICRGKHVRKPRPCPKYLAGFCPLGPNC 150


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -3

Query: 858 WKKNRAEICSGAILSQVPFE*TPGSAGQLSICNKGVFQKARQLSRILLNPLIGATNLGSL 679
           W   R    SG + S  PF       G L I N+ V    R     +    +GATN+GS+
Sbjct: 292 WVVERRRHFSGELFSVSPF--MARRLGNLFILNERVALMGRYKYGFMSMIPVGATNVGSI 349

Query: 678 SVQ 670
            ++
Sbjct: 350 RIK 352


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  LDRDLDGHPDEQLPCNEPRCKKDNCPDVSNS 112
           +D D+DG+ D  +    P  KK++  + SNS
Sbjct: 256 MDEDVDGYSDHSVSVAAPIPKKESRKESSNS 286


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 656 GITGFWTDKLPRFVAPIR 709
           G T FW +K+ RF+A ++
Sbjct: 229 GYTAFWDEKIARFIAHLK 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,314
Number of Sequences: 5004
Number of extensions: 52882
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)