Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30064
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.4  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   7.9  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 731 FWWLENKFKLEPNVYTILHFIK 666
           +W++++KFK  P  YT+  F +
Sbjct: 178 YWYIQHKFKHIPGAYTVYAFFE 199


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = -3

Query: 685 PYYTL*KNLGTMVNGFILIFSNIIQLQFILKARFNLLTKFIIRRPNSRILVF 530
           PYY      G  +N + +I  N+I     +    N+L  F +     + + F
Sbjct: 504 PYYRYISGFGAALNIYFMIICNLIGFAVGIDGIKNVLVSFFLTLKGKKFIYF 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,003
Number of Sequences: 5004
Number of extensions: 69415
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)