Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20031
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    52   1e-07
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    51   2e-07
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    33   0.059
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   5.1  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   5.1  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   6.8  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   6.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.0  

>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +3

Query: 153 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKLFDKAK 275
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLK     K
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGK 44



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +2

Query: 221 GKILLRIQANFETLRQGKAKLVIIAKNAPPLR 316
           GK +L  ++  +TLR GKAKL++IA N PPLR
Sbjct: 27  GKYVLGYKSTLKTLRSGKAKLILIAGNCPPLR 58


>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +3

Query: 159 AKKQKKTIESINSRLALVMKSGKYCLGYKQTLKLFDKAK 275
           +KK KK+ ++INS+LAL MKSGKY LGYK TLK     K
Sbjct: 14  SKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGK 52



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +2

Query: 221 GKILLRIQANFETLRQGKAKLVIIAKNAPPLR 316
           GK +L  ++  +TLR GKAKL++IA NAPPLR
Sbjct: 35  GKYVLGYKSTLKTLRSGKAKLILIAANAPPLR 66


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 32.7 bits (71), Expect = 0.059
 Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
 Frame = +2

Query: 569 ILFCWITMWGTYGVVFKLDTALWQVRIMFSIQI--FYVIHRLYLYE 700
           +LFC+++ +   G++ +L +A W +R +FSI I  FY+I   +LY+
Sbjct: 25  LLFCFLSAYPFAGILKRLPSAPW-IRNLFSISIGLFYLIGVHHLYD 69


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 374 LLTKKYGFPLWFSKTVRRNKVKLN*D*K*CKWYSNFFGRMYLLNKNF*FTFNDKL 538
           +LTK  GFP W S  V  +K+         K    F+  ++  NK + +T +D L
Sbjct: 129 VLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSL 183


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = +1

Query: 226 NIA*DTSKL*NSSTRQSKAGYHR*KCSSAKVRLLRSRVSQYLSKGCIWSLTDKEVWIPFV 405
           NI  D S L N      +  Y    CSS   ++L S +S+ L +  +W    K      V
Sbjct: 488 NINSDNSDLSNYPYNDYRV-YRMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMNSAV 546

Query: 406 V**NSSQK*G 435
           +   SSQ  G
Sbjct: 547 LRRQSSQSSG 556


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 724 TSFNFIYLFI*IQPMDYIKYLNRKHNSYLPKCSIEFKD 611
           T +N +Y  I         YL RK+N +  KC    +D
Sbjct: 226 TLYNCLYELIDRDKKSIYNYLRRKYNPFKKKCKWTIED 263


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 737 TAVNNFIQLHLLIHINTTYG 678
           T V+  I+LHL  H N TYG
Sbjct: 548 TLVSLLIRLHLDFHTNNTYG 567


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 710  HLLIHINTTYGLH 672
            HLL++++ TYGLH
Sbjct: 2483 HLLVYLSKTYGLH 2495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,115,521
Number of Sequences: 5004
Number of extensions: 64435
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)