Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20018
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    42   6e-05
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    27   2.5  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   5.9  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   7.8  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   7.8  

>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 282  IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQA-HGLKSKDIYRTEPDKIKFQQLRKLF 458
            IFG+PL ++V  S   +D+GLP+VV   I+YL++    K + IYR        + L++ F
Sbjct: 1062 IFGLPLNEAVNISTQFNDSGLPIVVYRCIEYLESCRAEKEEGIYRLSGSASTIKHLKEQF 1121

Query: 459  TD 464
             +
Sbjct: 1122 NE 1123


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 458 HGSRAYIPVSLGRSCRLAMLKAFISELPESILTQELH-GQFEQATAIAEPQ 607
           +GS  Y PVSL R     M++ F  E  E  L Q+++ G   +A  I +PQ
Sbjct: 317 YGSEFYCPVSLLRVYGKTMIEEF-EEANEDFLEQKVNDGSAIKADEIRKPQ 366


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +3

Query: 330 DDTGLPLVVR-DSIDYLQAHGLKSKDI--YRTEPDKIKFQQL 446
           +DT LP   +   +DY +A  + +K+I  +R   DK+KFQQL
Sbjct: 86  EDTLLPSPCQLVGVDYSEAAIVLAKNIARHRQFSDKVKFQQL 127


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 217  IPSTVTSGV-PFEEFSHWELRSLYSVYHCNSLWSA 318
            I  TV S + PFEE+   EL  +     C SL  A
Sbjct: 1267 ISGTVRSNLDPFEEYGDGELNEILKTASCESLVQA 1301


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 517 QSFYQ*TPGIDTNTRAAR---SVRTSHRYSRTSAGSDDDEP 630
           +SF   T G+ T  + A    S  TSH   R+SAG+D   P
Sbjct: 149 ESFEAFTQGMQTTPQRAGAGVSTATSHTRRRSSAGTDPFSP 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,980
Number of Sequences: 5004
Number of extensions: 42400
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)