Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00028
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   4.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   5.8  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   7.7  

>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 374 KSKIAIHPVLLTLPILSKSRQLSTRLLVQ*LTLKFCTVSIQAHKKNKFNTD 222
           K+K+ +   L  +  L KS++L    +    +L FC V I+  K N FN D
Sbjct: 428 KTKVDVEVALSGIDRLLKSQELVFATVGITPSLIFCYVIIRYVKANIFNND 478


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 359 LRSLTFIRYVDNNGILKNRLSH 424
           L SL   RYVD+   LKN L H
Sbjct: 295 LESLFLDRYVDHYSYLKNGLKH 316


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 391 VNVTNESQRSQSILFFLHCQF 329
           + +T E      +LF+LHC+F
Sbjct: 45  IKLTKEKHEKLLLLFWLHCKF 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,325
Number of Sequences: 5004
Number of extensions: 36452
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)