Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00027
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    29   0.56 
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    26   6.9  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    26   6.9  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.2  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   9.2  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 10/36 (27%), Positives = 28/36 (77%)
 Frame = -1

Query: 631 NFQ*QLALRPQITRKLDITRVRRVGKKHTLKYRVNL 524
           N+Q ++ L+ +  ++L +TR++++ K++ +K+R++L
Sbjct: 513 NYQRRIKLQKE-AQELQLTRIQKIAKQYLIKWRISL 547


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 654 CIHGDIFQEEASRVQRAYHC 713
           C  GD+ ++EA R  R +HC
Sbjct: 180 CWTGDVCEDEAFRGSRQFHC 199


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 374 KSKIAIHPVLLTLPILSKSRQLSTRLLVQ*LTLKFCTVYIQAHKKNKFNTD 222
           K+K+ +   L  +  L KS++L    +    +L FC V I+  K N FN D
Sbjct: 428 KTKVDVEVALSGIDRLLKSQELVFATVGITPSLIFCYVIIRYVKANIFNND 478


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 491 ISRTNILSVYVKVDPVF*SVFFSNPSHSSNVEFPRD 598
           ISR+N+  + VK+ P    +   N SH+ +++ P D
Sbjct: 412 ISRSNLEVIPVKIYPYAHELISLNVSHNLSLDLPLD 447


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 572 SSNVEFPRDLRS*SELLLKVGSLQTKVMYSRRYLSRRG 685
           S+   F RDL + S+L+  + ++Q K +YS +    RG
Sbjct: 52  SNYAPFNRDLETFSDLIFGLTNIQKKSLYSLQLGRSRG 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,508
Number of Sequences: 5004
Number of extensions: 65084
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)