SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00025
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...    75   1e-14
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    30   0.42 
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    30   0.42 
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    30   0.42 
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    30   0.42 
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    28   1.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   1.7  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    27   3.9  
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    25   9.1  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 31/61 (50%), Positives = 48/61 (78%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
           E+D K+I+RA KK+FACNGT+V+  + GEV+QLQGDQR  + ++LT+   ++ + +K+HG
Sbjct: 49  EFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHG 108

Query: 435 F 437
           F
Sbjct: 109 F 109



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
 Frame = +1

Query: 112 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGL 249
           +IQN NT DPFAD   + +DD Q    +H+RIQQRNGRKTLTTVQGL
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGL 46


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 669 QSNEIVNIPNSLFLFLYDIVFLNCCN 746
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 669 QSNEIVNIPNSLFLFLYDIVFLNCCN 746
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 669 QSNEIVNIPNSLFLFLYDIVFLNCCN 746
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 669 QSNEIVNIPNSLFLFLYDIVFLNCCN 746
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 171 VLRAFDSIGEWVECVEILDGHTIERRVSLFQR 76
           +LR   S+  W+  ++  +G T+E+RV LF+R
Sbjct: 25  LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFER 56


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 301  ANSFLHARTIFFRSYSRKGLAP*SASYARFVAGYGRGLNHLERRP 167
            ANSF  + +  F+   +    P + S  +F+ G+G+G+  L  +P
Sbjct: 2798 ANSFYDSMSSGFKGLKKPFTDPKNNSAGKFLKGFGKGMLGLATKP 2842


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 290 LACPHDLLQVIFEERPCTVVSV 225
           ++CP  LL VIFE RP  ++++
Sbjct: 114 VSCPVGLLLVIFEARPEVIINI 135


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +1

Query: 73  VSLKQRDPTFNRMSIQNLNTFDPFAD-AIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
           V  +   P     S++ L   D     AI     D +  + H R+Q +N R T    QG+
Sbjct: 50  VEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGI 109

Query: 250 SS 255
            S
Sbjct: 110 ES 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,453
Number of Sequences: 5004
Number of extensions: 61772
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -