Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00021
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    27   1.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.3  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    26   4.4  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   7.6  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   7.6  

>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 173 TQPIRAGQGGRVSNREPVFKTEAGAGSQDEQKSAALRAHL 292
           TQP+R G+  R        KTE G  S  + K A   A L
Sbjct: 219 TQPVREGEDERAGRWRGREKTECGLHSHPQSKFAQYMAEL 258


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 132 EKIERHIMKSVPGGHNLFVQDKEVASLIENLYSKLKLVLVRKMNRNQRRYELI 290
           +KIERHI  S+     L + D     ++E+L++ L  V+    +   R  ++I
Sbjct: 67  KKIERHIYISLNSIQLLAINDALSPDILESLFNSLNAVIQLGQDSQLRVLQII 119


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 234 VLNTGSR-LETRPPCPARIGCVPLARTS*CDVRSFRSQVSPAH 109
           VLN G R LET PP P+     P+A  +    R+  SQ  P H
Sbjct: 258 VLNIGDRSLETPPPIPSPRPPQPVAVEAIQQSRAVISQQLPLH 300


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 48  KPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMKSVPGGHNLFVQDKEVASL 212
           + PP +         PI++D+G+  +E+  I  H+++    G +    +++VA L
Sbjct: 37  RAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKY--GPSFKPSEEDVAEL 89


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 104 R*WA--GDT*ERKDRTSHHEVRAR--GTQPIRAGQGGRVSNREPVFKTEAG 244
           R WA  G T E+K+  SHHEV  R  G  P R   G +VS     F  + G
Sbjct: 129 RKWAPEGVTVEKKNCLSHHEVLTRLDGYDPER---GVKVSGHRGYFLRQYG 176


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 454 PQSTERRRYLEVHEVLPADADVLHLRHQLAVETAHSVAR*EPGLPA 317
           P  ++ R  LE   V+   +D+LH +HQ+ ++  + +   E  L A
Sbjct: 279 PILSDIRSKLESERVVLEQSDLLHKKHQMLIQLENDLQFREQRLSA 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,494
Number of Sequences: 5004
Number of extensions: 39059
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)