Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00020
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 31 0.22
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 29 0.67
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 27 2.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 2.7
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 2.7
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 4.7
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 4.7
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 26 4.7
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 26 6.3
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 26 6.3
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 25 8.3
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 25 8.3
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 25 8.3
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 30.7 bits (66), Expect = 0.22
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +2
Query: 422 GVHTESRCSEYGKPKRCRHERAVQHT*RLWLQESDAIEKYFKEEVGEDLPNEMWDELNKL 601
G T C YG+ CR+ + V+H R +QE++ + D N+ +E+N+L
Sbjct: 20 GELTCQNCMVYGE--ECRYVKRVKHDNRAAVQENERYPILYTPLSTSDHDNDEENEINEL 77
Query: 602 RKNIQA 619
+ ++A
Sbjct: 78 KNAVKA 83
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.67
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +3
Query: 207 ESILRLQLRRLPEALASMPQPGRNMPKIFHVNWFRKDEQGKFLWPGFGENSRVLDWILRR 386
ES+++L R+ P A+ P PG+ + + + +FL SR+L+ LR+
Sbjct: 60 ESLVKLMRRQYPAAIVP-PIPGKQSLLSYAKHPRKAKSDAEFL----NFRSRMLELFLRQ 114
Query: 387 CDGEPCHAETPL 422
C PC P+
Sbjct: 115 CLLHPCIRSNPI 126
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 503 RLWLQESDAIEKYFKEEVGEDLPNEMWDELNKLRKNI 613
RLW E ++ + + G D P + DELN L I
Sbjct: 45 RLWTSEPESQQLGMIVDKGSDFPQVILDELNDLHTGI 81
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +2
Query: 506 LWLQESDAIEKYFKEEVGEDLPNEMWDELNKL 601
LW++ SD +EK +++V +++ ++ W +K+
Sbjct: 290 LWIRLSDLVEKQRRKKVEQEVSDKGWVSADKM 321
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 386 LRRGAL---PRRDSTGVHTESRCSEYGKPKRCRHE-RAVQH 496
LRR +L P+R STG+H S + + P R H+ A+ H
Sbjct: 255 LRRPSLTYSPKRQSTGLHRRSLTNYFKFPHRNAHQHNAIAH 295
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 445 APALGMYPSGVSAWQGSPSQRRKIQ 371
APAL M PS + WQ P+Q+ +Q
Sbjct: 450 APALSMNPSSLPPWQ-QPTQQSAVQ 473
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 129 GNFHEVRSHGRRRTQW*NGDARSVCDESILRLQLRR-LPEALASMPQPGRNMP 284
GN S+ +RR+Q A S+ +++ ++ +PE + S PQP ++P
Sbjct: 161 GNRSHTTSNAKRRSQ---KAASSISTTNVVSSDPKKYIPETVPSTPQPASSLP 210
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 659 TRLILYLWSNLKLGLVCSSSTCSIRPTFRWVDLR 558
T L+ + + NL L+ SST + RPTFR+ + R
Sbjct: 448 TFLLTFGFINLSCFLLRISSTPNFRPTFRYFNRR 481
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 591 NSSHISLGRSSPTSSLKYFSMASDSCSQS 505
NSS ++ G+ P SS FS + SQS
Sbjct: 268 NSSFVNSGQGIPNSSFSSFSQVASGFSQS 296
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 491 QHT*RLWLQESDAIEKYFKEEVGEDLPNEMWDELNKLRKNIQAQAL 628
QH LW + + ++ EE GE+L + + E+N L+K + + L
Sbjct: 61 QHIATLWPETQSSDQE--NEEEGEELEDAVAKEINSLQKKNKKELL 104
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 16 EWENSEGVPISAILLGGRRPAGV 84
+WE + +P+S +L GG P V
Sbjct: 698 DWEAASFIPVSYVLAGGLTPKNV 720
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 396 EPCHAETPLGYIPRAGALNTEN 461
+PC A++ GYIP G + EN
Sbjct: 51 QPCDAQSTGGYIPGKGIVLCEN 72
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 503 RLWLQESDAIEKYFKEEVGEDLPNEMWDE 589
++W Q+ + K F+ ED+ +E DE
Sbjct: 110 KVWFQDVSQVHKVFEARDSEDITSEAVDE 138
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 616 SPSFKLDQRY-KIKRVN*YSEM*IISIKVLKYI 711
SP + Q++ K++R+N Y E SIK+ K I
Sbjct: 866 SPKYSSSQKHLKVERINIYGEQTRKSIKIRKII 898
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,915
Number of Sequences: 5004
Number of extensions: 59767
Number of successful extensions: 199
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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