Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00014
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    30   0.29 
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    27   1.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.7  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   6.2  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   6.2  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   8.2  

>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 76  SAFCWHFYNNKFVTKKPYIKFTSCFIDAH 162
           S  CWH +       K Y++   C+I+AH
Sbjct: 77  SGVCWHIFGLISRADKDYVQAAKCYINAH 105


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 82  FCWHFYNNKFVTKKPYIKFTSCFIDAHF 165
           F   F  NK  T KP+ K+ +CF D  F
Sbjct: 323 FSKQFLPNKISTFKPFSKYPACFKDIAF 350


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +2

Query: 56  SSSSFRNPPFVGTSTITSSSLKNPISNS 139
           SSSSF + P   +STI+SSS  +P S+S
Sbjct: 328 SSSSFSSSPTSSSSTISSSS-SSPSSSS 354


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 47  TDVSSSSFRNPPFVGTSTITSSSLKNPIS 133
           T+V S++     ++G ST+ SSSL N +S
Sbjct: 219 TNVDSTTTSVINYIGASTLESSSLTNTVS 247


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 288 SVSGWILLLHVYSDNDIVFNDIHAIF 211
           ++S  ILLL   S+N +V N +H  F
Sbjct: 881 AISRSILLLEQISENSVVVNSLHNYF 906


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 64  IVPQSAFCWHFYNNKFVTKKPYIKFTSCFIDA 159
           I P+S FCWH     +   K Y     C+ +A
Sbjct: 71  IDPKSQFCWHALAIVYRETKDYNNSLKCYQNA 102


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 329 NYLEETTILKVIHEVLVDGYYYY-----MFIVITILYLTTFMQFLTFISLHSNMSITLVP 165
           NY+  + ++ V H++L D   Y+     M + +  LY     Q+L   SL+ N  I   P
Sbjct: 530 NYISSSRLVHVDHQILQDRSKYWKINQAMLVTLQRLYNFYRFQYLEEQSLY-NFKIPGFP 588

Query: 164 KC 159
            C
Sbjct: 589 LC 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,371
Number of Sequences: 5004
Number of extensions: 51539
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)