Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00008
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    31   0.073
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    30   0.13 
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    27   1.6  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   2.1  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   2.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   3.6  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   3.6  

>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 31.1 bits (67), Expect = 0.073
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 268 SVRKLATLSAYEVFKDILPEYQIR--HQDYSNVKLKKD 375
           +++KL+ L+   VF+DI+P Y+IR   ++    KL K+
Sbjct: 255 TIKKLSLLTLLAVFRDIIPGYKIRPLSEEEQGTKLSKE 292



 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 125 KEKLNNDKLRIGALCSSLLESPEKKL 202
           K+++ NDK  +G     LLE P + L
Sbjct: 214 KQQIKNDKEALGIQAQQLLEEPVENL 239


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
 Frame = -3

Query: 410 NNSFSYLYKARVSFFNL---TFE*S*CLIWYSGRMSLN-TSYADNVASFRTECRFNNHPS 243
           NN+ + LY A + FF L     E    + +Y      N +++A+N+  F     F+ + S
Sbjct: 101 NNTDAMLYLANIEFFGLFEIIPEIEDSVKYYDMLQKANGSAFANNMMGFFYSTSFSEYAS 160

Query: 242 VSPPLDTG*ERNFLTFSLDSRAKMSTRHRFLIYHCLVSL 126
            +P L        + + L ++      H+FL YH L++L
Sbjct: 161 NNPALAR------IHWELAAKQGSLDAHQFLAYHNLIAL 193


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 191 LDSRAKMSTRHRFLIYHCLVSLF 123
           LDS  K ++R R+L+Y+ L+  F
Sbjct: 325 LDSNLKSTSRDRYLVYNSLIKSF 347


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 176 LLESPEKKLKNFFPILYLME 235
           L+E+P + L+N FPI ++M+
Sbjct: 341 LIENPYRMLRNTFPIWFIMQ 360


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +2

Query: 20  SSDSGLLGTPEECDTPDREPADDNVISAVDLMVARKEKLNNDKLRIGALCSSLLESPEKK 199
           +++   L  P+   TP R P D   I+A      R      +K+R+ AL   L + P  K
Sbjct: 421 AANGSALAAPQA--TPFRTPRDTFSINAAAERAGRLASERENKIRLKALRELLAKLP--K 476

Query: 200 LKNFFPILYLMEERLKD 250
            KN +    LME R  D
Sbjct: 477 PKNDYE---LMEPRFAD 490


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 154 NRCLVLIFARESREKVKKFLSYPVSNGGETEGWLLNLH-----SVRKLATLSAYEVF 309
           N  + +++ +   +++  F SY    G   E WLLN+H     S +  +TLSA + +
Sbjct: 42  NDPMKIVYKKNEIDRMMGFDSY--EGGQPREAWLLNVHPTVIESTKGNSTLSAVDFY 96


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 17/86 (19%), Positives = 37/86 (43%)
 Frame = -3

Query: 398 SYLYKARVSFFNLTFE*S*CLIWYSGRMSLNTSYADNVASFRTECRFNNHPSVSPPLDTG 219
           +YL +     +N  FE    ++ + G++   T +   V     + +F N+P++   LD  
Sbjct: 263 AYLAEVSTRAYNGVFERFRTIL-HEGQLERRTQFIIEVLFQTRKDKFKNNPTIPQELDLV 321

Query: 218 *ERNFLTFSLDSRAKMSTRHRFLIYH 141
            E + +T  +     +  +    I+H
Sbjct: 322 EEEDQITHYISLDDNLDVQESLGIFH 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,233
Number of Sequences: 5004
Number of extensions: 31891
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)