Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00007
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          27   2.0  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   4.5  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   6.0  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   7.9  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   7.9  

>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 322 VGENKALTAKKGRFNPYTSTFQQCK 396
           VG+   LT++K RFNP  ++F   K
Sbjct: 141 VGQKLKLTSQKQRFNPMAASFNYSK 165


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 246 FSHFSQTIFVLFLTNLTSLY*YEIL 172
           FS  S   FV+FL+ +TSL  Y IL
Sbjct: 323 FSKISNVFFVIFLSLITSLTAYAIL 347


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = -1

Query: 371 YGLNRPFLAVNALFSPTTRPPDSTVFLAPAFQGSGVITLPISFRTSHKP 225
           YG    FL +  L S    PP+   +L   +Q        I +  SH P
Sbjct: 163 YGYPSQFLPIEKLTSNVAYPPNYNNYLKSPYQQPTNFPPEIQYNYSHSP 211


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 267  CYYSANFFSHFSQTIFVLFLTNLT 196
            C    NF++HFS+ +FV   T  T
Sbjct: 959  CLVLLNFYNHFSEPLFVTVKTAST 982


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 329  SPTTRPPDSTVFLAPAFQGSGVIT 258
            S T  P  STV   P +QGSG  T
Sbjct: 1479 SSTEAPESSTVTSNPIYQGSGTST 1502


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/52 (21%), Positives = 19/52 (36%)
 Frame = +1

Query: 385 QQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKILDTKNYSRAQLSLLLCY 540
           Q+C  C   V ++       C      C +CG  +++   Y      +  CY
Sbjct: 366 QRCPTCDRVVERIDGCCHMNCLCGTHFCFLCGAYLMEQNPYKHFNDPVSSCY 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,216
Number of Sequences: 5004
Number of extensions: 45079
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)