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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00006
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    85   8e-18
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom...    75   7e-15
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    35   0.009
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    34   0.016
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    31   0.19 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    29   0.44 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    29   0.59 
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    29   0.59 
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    28   1.0  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    28   1.4  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    28   1.4  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   1.8  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   1.8  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    27   2.4  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.1  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   4.1  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.5  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   5.5  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   9.5  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.5  

>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 85.0 bits (201), Expect = 8e-18
 Identities = 37/71 (52%), Positives = 53/71 (74%)
 Frame = +1

Query: 7   LKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
           LK+ L  +F  +G+++D+ A KTL+MRGQAFV+F  + +A+ AL+ +QG+P Y KPM IQ
Sbjct: 42  LKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQ 101

Query: 187 YSKIDSDIIAK 219
           YSK  SDII +
Sbjct: 102 YSKSKSDIIVQ 112



 Score = 58.4 bits (135), Expect = 8e-10
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
 Frame = +3

Query: 333 GAGILNNVNAEQ-PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEL 509
           GA   + +N +  PPN++L L N+P E +  +L+ +F  F GF+EVR+VP R  IAFVE 
Sbjct: 158 GAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEY 217

Query: 510 E 512
           +
Sbjct: 218 D 218


>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 33/72 (45%), Positives = 54/72 (75%)
 Frame = +1

Query: 4   ELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
           +L+ +LY +FS +G ++DIVA+KT KMRGQA V+F + S+A +A+++++ F F+ K M+I
Sbjct: 19  DLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKI 78

Query: 184 QYSKIDSDIIAK 219
           QY+   S II +
Sbjct: 79  QYAHSKSKIIER 90


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
           EEL  ++   F Q+G +L +  +K    R  +FV F+    A+ AL   Q      + +R
Sbjct: 93  EELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIR 152

Query: 181 IQYSKIDSDI 210
           I+ +K++  I
Sbjct: 153 IERAKVNRTI 162


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 327 IPGAGILNNVNAEQ-PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAF 500
           IP +   N   A+Q PP   +++ NLP  TSE  L +LF+   G+K +         + F
Sbjct: 408 IPASTPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCF 467

Query: 501 VELE 512
           VE E
Sbjct: 468 VEFE 471


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 10  KKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
           ++ LY+IF  +G++  +    T+     A + F  + SAT AL  M GF +      ++Y
Sbjct: 176 QERLYSIFRTYGKLRSV----TINSPTSATLSFSSLRSATSALNCMHGFVYGKTEFHMRY 231

Query: 190 SKIDSDIIAK 219
             ++  +  K
Sbjct: 232 RHMNRFVAFK 241


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 70  KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPK 249
           K L M G  FV F++ +SA  A+ +M GF      + I+ S    D  A+ +     +PK
Sbjct: 661 KYLSM-GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPK 719


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 31  FSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
           F+QFG++LD   M    T + RG  FV + E  SA  A  S      + KP+ ++
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTY-ENESAVEATMSQPYITIHGKPVEVK 320



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFR 111
           E    SL   F QFG++LD   M+   T + RG  F+ F+
Sbjct: 173 ETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNR 485
           E+  +  L +TNL D+T E  L  LF +F G + V L  ++
Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDK 237



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 10  KKSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
           ++ L  +F +FG I  +   K   T + +G AFV + +   A  A   + G+ + +  +R
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILR 274

Query: 181 IQYSK 195
            ++SK
Sbjct: 275 CEFSK 279


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 357 NAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLV 476
           ++++ P+ ILF+ NL  ET++  L   F Q    + VRL+
Sbjct: 221 SSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 94  AFVIFREISSATVALRSMQGFPFYDKPMRI 183
           A+++FR+ SSA  AL S+ G  F D+ +R+
Sbjct: 229 AYIVFRDSSSARSAL-SLNGTMFMDRHLRV 257


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 381 ILFLTNLPDETSEMMLSMLFNQFPGFKEVRLV 476
           ++F+ N+P + SE  ++ +FNQ    K  +LV
Sbjct: 8   VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLV 39


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 25  AIFSQFGQILDIVAMKTLKMRGQAF--VIFREISSATVALRSMQGFPFYDKPMRI 183
           AIF  FG I  +   +  + R + F  + +R   SA  AL  M GF    + MR+
Sbjct: 358 AIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 625 NYMFYITLFLSKSNLHCMCWCYFES 551
           N+ F++ ++L +  LHC C  Y ES
Sbjct: 161 NHPFHVPVYLFEKRLHCSCSEYEES 185


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 19  LYAIFSQFGQILDIVAMKTLKMRGQ---AFVIFREISSATVALRSMQGFPFYD 168
           L +I+S FG + ++V  K +    +   + ++F  +SSA  A+ + +    YD
Sbjct: 184 LRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSAYSAINAEKPSKIYD 236


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 113 KFQVPLLLCGACKD 154
           KF +P ++CGACK+
Sbjct: 65  KFHIPCVICGACKN 78


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 25/78 (32%), Positives = 35/78 (44%)
 Frame = +1

Query: 10  KKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
           +K +   F +FG+I  I   K L  +  AFV F  I  A   +R++   P Y    RI +
Sbjct: 312 EKEIEEAFGKFGKIEHI---KILSKKNIAFVHFLNIRDAIKVVRTLSCDPDYHS-WRIFF 367

Query: 190 SKIDSDIIAKSKGTFQER 243
               SD  A    +F ER
Sbjct: 368 G---SDRCANHPPSFDER 382


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 94  AFVIFREISSATVALRSMQGFPFYDKPMRIQYSKI 198
           AF+ F    SA  A+ S+ G  F    ++++Y+ I
Sbjct: 69  AFITFENKCSADNAIASLNGSSFQGNTLKVEYTHI 103


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 468 RLVPNRHDIAFVELEMKCNLQQLKKHYKDSK 560
           RL   R  + FV+LE+K  ++ LKK  +++K
Sbjct: 275 RLEKIRELLTFVQLELKYYVEPLKKELQETK 305


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 85  RGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
           RG  FV F + +    AL  MQG    D+P+R+
Sbjct: 228 RGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 369 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRH-----DIAFVELEMKCNLQQ 533
           PP  +LF+  L   T +  L ++F++F      +++ ++        AF+E + K ++++
Sbjct: 241 PPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 294 FSFSSHHQYL*VAWTFRSFLKCSFTFCYYITINF 193
           F+ +S H YL   W   + L  ++TF + + I++
Sbjct: 278 FTLTSGHGYLFWLWILSALLSSAYTFLWDVFIDW 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,956
Number of Sequences: 5004
Number of extensions: 53889
Number of successful extensions: 167
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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