Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0201.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   2.4  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   4.1  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   7.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   9.5  

>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 228 GN*SNARCRTVTEGPVQPIKLTKMDV 305
           GN  +ARCR++T G V+  +L  MDV
Sbjct: 126 GNVVDARCRSLTAGFVREQRLAGMDV 151


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 329 VSHRYHGLHIHLRQFYWLNRSLRY 258
           + HRY   H  LRQFY    +LRY
Sbjct: 221 LKHRYKSQHHRLRQFYADCSNLRY 244


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 335 HGYCSACAKCCKQISRSQ 388
           H YC +CAK  K   RSQ
Sbjct: 214 HVYCGSCAKVLKTSKRSQ 231


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 114 HCYCFAYFQWNDLFNWFS 61
           H YCF    W +L+ W +
Sbjct: 413 HIYCFKITSWVNLYGWIT 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,244
Number of Sequences: 5004
Number of extensions: 54486
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)