Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0059.Seq
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    79   2e-16
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   3.1  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    24   5.5  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 78.6 bits (185), Expect = 2e-16
 Identities = 41/71 (57%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   DLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAIRXMGESDDC 179
           DLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +R  GESDDC
Sbjct: 10  DLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFVRSKGESDDC 68

Query: 180 IVRLTKXXGXL 212
           I RLT   G L
Sbjct: 69  INRLTTQDGLL 79


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -1

Query: 152 DSPT--DNIHFRCVSSTTCGGVYVSN 81
           D PT  D I   C     CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 76  SCTEAWSLAWMRRLLAEHFLGQYKS 2
           S T+A SL W  +   +H + Q+KS
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKS 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,522
Number of Sequences: 5004
Number of extensions: 13144
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)