Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0075
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   132   3e-32
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    91   1e-19
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.6  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   8.4  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score =  132 bits (320), Expect = 3e-32
 Identities = 63/91 (69%), Positives = 71/91 (78%)
 Frame = +3

Query: 258 LTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPS 437
           LT SEKILY HLDDP  Q+IERG SYL+LRPDRVA QDATAQMA+LQF+S+G+P VAVP 
Sbjct: 59  LTYSEKILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVPV 118

Query: 438 TIHCDHLIEAQVGGEKDLARAKDLTKKYTSF 530
           T+HCDHLIEA  GG  DL RA    K+   F
Sbjct: 119 TVHCDHLIEAYEGGPIDLERANVTNKEVYDF 149



 Score = 58.4 bits (135), Expect = 7e-10
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +2

Query: 509 NKEVYKFLETAGAKYXVGFWKPGSGIIHQI 598
           NKEVY FL+TA AKY +GFW+PGSGIIHQI
Sbjct: 143 NKEVYDFLQTACAKYNIGFWRPGSGIIHQI 172



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
 Frame = +1

Query: 106 VLSEIQQRCFSVSPLTAA--AAQVAMSKFDKVP-LXYEKLTKNLEVVKKRLGR 255
           + ++   R FS +P+ A   A +VAMS F+K   + Y+++  NLE+VKKRL R
Sbjct: 5   IFTQSTLRSFSCAPVAANIDAKKVAMSNFEKNKFINYQRIKDNLEIVKKRLNR 57


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 44/84 (52%), Positives = 59/84 (70%), Gaps = 6/84 (7%)
 Frame = +3

Query: 258 LTLSEKILYSHLDDPK------GQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLP 419
           LTL+EK+LYSHL +P+           RG+ YL+L PDRVAMQDA+AQMA+LQF++ GL 
Sbjct: 57  LTLAEKVLYSHLVNPEESFSGVSPSDIRGSLYLKLNPDRVAMQDASAQMALLQFMTCGLE 116

Query: 420 RVAVPSTIHCDHLIEAQVGGEKDL 491
           +  +P++IHCDHLI    G   D+
Sbjct: 117 KTMIPASIHCDHLIVGHRGANSDI 140



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 509 NKEVYKFLETAGAKYXVGFWKPGSGIIHQI 598
           NKE++ FL++A  KY + FW PGSGIIHQI
Sbjct: 147 NKEIFDFLQSAAKKYGIQFWGPGSGIIHQI 176


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 102  GGTL*NPTKMFQRISIDRRRGPGGDVQVRQGT 197
            GG++ N  +   ++ ID  R PG ++ V QG+
Sbjct: 1226 GGSIINKIRKIAQVKIDVPRTPGDEIVVVQGS 1257


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 134 KHLCWISESTTLVLLPWPCKTLIQCAMVAGLQYIKRINLEKF 9
           ++ CWIS   TL+LL     T +Q   +  L  I RI    F
Sbjct: 320 QYKCWISRDVTLILL-----TALQLVNIYWLILILRIGYRAF 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,986
Number of Sequences: 5004
Number of extensions: 46523
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)