Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0062
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   2.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.2  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   4.2  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   9.7  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   9.7  

>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 197 NIGVFLDSLVRGGVAANLQHAT 132
           NI +FL SL  GGVA NL  A+
Sbjct: 861 NITIFLVSLKAGGVALNLTEAS 882


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 251 LDNWHDALALTDGGVAGENIGVFLDSLVRGGV 156
           L NW +   L + G+   N+G F  S+VRG +
Sbjct: 585 LGNWTNIEYLPNSGINPSNVGTF--SMVRGAI 614


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 130 GVAC*RLAATPPRTKLSRKTPMFSPATPPSVRANASCQLSSPSL 261
           GV   +L A  P TKLS   P      P + +A A+ +   P+L
Sbjct: 367 GVEQIQLCAVDPNTKLSITIPEAGSTDPETQKARAAFESFPPNL 410


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 105 KDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQ 224
           K  CHF   +C LK+  +  +  A+  N++ ++    + Q
Sbjct: 148 KHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLELVSQ 187


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 172 WYEGVLRPIFSTQRHLAKWQPSFL 101
           W E   R + +T+R L KW   F+
Sbjct: 223 WAEDTPRELVTTRRELLKWTVEFM 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,934
Number of Sequences: 5004
Number of extensions: 39070
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)