Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0064.Seq
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   3.3  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   4.4  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   4.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   5.8  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   5.8  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    24   7.7  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    24   7.7  

>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 247 GNIGLKTCKNIKNIIKS*MFVDLLLVAIATTACSVLSASFLTFSIAXKLTR 95
           G + +  CKNI NI+K     D+  + I+   C +L+ + L  S A  + R
Sbjct: 184 GIVTVIDCKNIDNILKD--ESDIGFIQISHADCLILNKTDLISSEALSVVR 232


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 105 FXAIENVKKLALSTLHAVVAIATNSRS 185
           F ++EN +K A+  L +V  I  NSR+
Sbjct: 443 FISLENERKTAIKALDSVKMIPPNSRA 469


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 179 QINKHLRFDYIFNIFTSFQADI 244
           ++N H  FD +  +FT F A+I
Sbjct: 734 KVNDHFGFDLLDRVFTVFNANI 755


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 99  VNFXAIENVKKLALSTLHAVVAIATNS 179
           +N    ENVK LA +T+  V    TNS
Sbjct: 301 LNLLKKENVKMLAFATIGKVAVAITNS 327


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 49  RPSGKRRETVPTPYKFEL 102
           RP+G ++  +PT Y F L
Sbjct: 212 RPAGSKKRVIPTGYGFNL 229


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 102 NFXAIENVKKLALSTLHAVVAIATNSRSTNIYDLI 206
           NF  I+ V  L L  + A V I    R+ N  DLI
Sbjct: 743 NFSMIDYVDALRLGIVEAYVGITQAVRTDNRLDLI 777


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 145 VLSASFLTFSIAXKLTRI 92
           ++S SFLTF++  KLT +
Sbjct: 494 IVSVSFLTFTVYAKLTNL 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,493,345
Number of Sequences: 5004
Number of extensions: 25858
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)