Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0056.Seq
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    27   4.6  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   4.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.1  

>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = -3

Query: 414 PRRSYPGYQKQLPFPEHPVHHGSVSGTEHDHSVV 313
           P     GY   +P   HP++   +  T HD+  +
Sbjct: 405 PNMFSTGYNISIPMLGHPIYEAGIEKTMHDYETL 438


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 432 IYRWYGPRRSYPGYQKQLPFPEHPVH 355
           +YR+   R++YP      P  +HP H
Sbjct: 238 LYRFRSSRQTYPQQPNSQPCEQHPAH 263


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 10  LHHFIIVQDIAFDRFRLRTNLHFQFFVNAAV--DCVQH 117
           L H  ++ DIA D+FR+   LH  F V+ ++    +QH
Sbjct: 229 LSHVNVLLDIALDKFRIEA-LHANFSVSISLRNKAIQH 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,601,528
Number of Sequences: 5004
Number of extensions: 75144
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)