Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0050.Seq
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    32   0.088
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.20 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   1.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   2.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.3  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    26   5.8  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 32.3 bits (70), Expect = 0.088
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 212 VQEILKDMASQGDYEVKHQRWPKPPELSPIYLPVSPVMP 328
           +Q IL+ +A +GD +   +  PKPP +  I  P+ P  P
Sbjct: 358 LQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 275 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 418
           P  P ++P    V P +PV P T++     +  P ++P     +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 257 VKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 394
           VKH   P PP   P+   +SP MP  PLT   S T     S PE+ P S
Sbjct: 740 VKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 215 QEILKDMASQGDYEVKHQRWPKPPELSPIYLPVSPVMPVQP-LTSLTLTQTASGPETSPA 391
           ++I K++A+          WP PP +    L V+     QP ++ +  T   S   T P+
Sbjct: 405 RDIAKNVATWLKNGENFSSWPLPPLMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPS 464

Query: 392 SDNLSVPS 415
           S ++  PS
Sbjct: 465 SQSMQSPS 472


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 95  NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYEVKHQ 268
           NQ S      D+D+  ASS++S A     D+D      N+       +A  GD   +H+
Sbjct: 3   NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQHE 61


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 173 YVDDTDKSIAILNVQEILKDMASQGDYEVKHQRWPKPPELSPIYLPVS 316
           +V   D ++ +L+   I K        + KH   P PP  S   LP+S
Sbjct: 114 FVQKLDSTLRVLDYNAINKFSIDLTPVQRKHVDMPPPPVFSQTSLPMS 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,081
Number of Sequences: 5004
Number of extensions: 62752
Number of successful extensions: 221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)