Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0037.Seq
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    31   0.063
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    26   2.4  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   3.1  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   4.2  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.5  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 31.5 bits (68), Expect = 0.063
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +3

Query: 219 ASEVVNFDESG*FCRSHGQVPATHLXNVCLINFRW*F---LRLPWLSRVTGNQGSIPERE 389
           + E+++F E        G   +  L   C+IN  W     LRL +L +   NQ S  E++
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEEQK 302

Query: 390 PEKRLP 407
            EKR+P
Sbjct: 303 QEKRVP 308


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 279 VLDHAICKIIQIHQNXRLRTRGPPSIGFDLIKALIP 172
           ++D    K   IH +  L  +  PS GF +I++L+P
Sbjct: 391 LIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 416 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 318
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 414 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 313
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 68  NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 172
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,860
Number of Sequences: 5004
Number of extensions: 33223
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)