Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0032.Seq
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    30   0.47 
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.47 

>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 274 PYYRELLIYHNAYSYFHRLLIEL 206
           P+   LL+YHN Y+YF + L +L
Sbjct: 83  PFILTLLLYHNFYNYFDQALADL 105


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 274 PYYRELLIYHNAYSYFHRLLIEL 206
           P+   LL+YHN Y+YF + L +L
Sbjct: 83  PFILTLLLYHNFYNYFDQALADL 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,531
Number of Sequences: 5004
Number of extensions: 59395
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)