Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0022.Seq
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   1.4  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   3.3  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   7.6  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 791  QPLFRKLRIQFADFXYLHXFYRLE 720
            +PL RKL IQ A+   L   YRLE
Sbjct: 1114 EPLLRKLHIQSANIKQLFRIYRLE 1137


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 447 TIIETVPLPGSGIGTGFPFARER*AD 370
           T+ E VP+P S  G  FPF R + A+
Sbjct: 264 TVREPVPVPKSNSGFRFPFMRNKPAE 289


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 320 NTAQAQLVNVLNAIYMVSRVGGLGFIFVTEFLDSVAALK 204
           N   +QL+N  NA+Y++    GL F+  T F+     LK
Sbjct: 607 NNLFSQLLNRTNAVYLIQTKIGLSFL--TLFISRAEILK 643


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,364
Number of Sequences: 5004
Number of extensions: 67956
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)