Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0023
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   1.9  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   4.5  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    26   4.5  
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 200 ISRLRRHCNMTVASYLDISYRVTYIIHVNNVYATXVTGNDYLELILGWKVW 48
           +++L ++    V   +   Y +T ++  +  Y   +    +L LI GW VW
Sbjct: 314 VAKLPQNLQPFVFMIIQYLYSITTMLPCSLWYNNKLYSTAFLALIFGWSVW 364


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 155  LDISYRVTYIIHVNNVYATXVTGNDYLELILGWKVWKSHATA 30
            +D S    +++H  NVY         L L+  WK  K+ ATA
Sbjct: 1204 IDESLEYRFVLHNANVYCQLGCDLIALGLLRNWKFQKNPATA 1245


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 5   TSLEAGRVLPSHGFSIPSIPKLILNN 82
           ++L+  + + +HG S   IP+LI+NN
Sbjct: 177 SNLQTAKEISNHGRSTGHIPELIINN 202


>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 556 FPLPVDTGFLPRTPTWPTRFGQRKVAAINSYLDVFCW 446
           FP  +DT    R    P +   +++ A+N+ LD   W
Sbjct: 25  FPKTLDTSIRARLQKMPPQQANKQLNALNNLLDNVYW 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,788
Number of Sequences: 5004
Number of extensions: 56920
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)