Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0021
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    48   2e-06
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.2  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 54/214 (25%), Positives = 70/214 (32%), Gaps = 3/214 (1%)
 Frame = +1

Query: 7   EDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 180
           +DI  LY                    EL  PGS  L G+ Q+YN  ++AH         
Sbjct: 18  KDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFI 77

Query: 181 XXXXXXXXXN*LVPLILGAPDIAFPE*II*DFDSYPPPLYY*FQEEL*KMVQEQDEQFTP 360
                    N LVPL++GAPD+A+P      F   PP L       L +          P
Sbjct: 78  IPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYP 137

Query: 361 HFHLISHIEGDPEILLFFHYX*QGFPQ-L*EQXXXXXXXXXXXXXXXXXXXXXFV*AVGI 537
               I+   G    L        G    L                        F  A+ I
Sbjct: 138 PLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMI 197

Query: 538 QHFXXXXXXLV*LGAITILLTDRNLNTSFFDPAG 639
                     V  G + +L +DRNLNTSF+ P G
Sbjct: 198 TSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEG 231



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +3

Query: 252 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSGD 401
           PR+NN  F              + E G G G TVYPPLSS  +H G + D
Sbjct: 102 PRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAID 151


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 278 TPTPLPYIINFKKNCRKWCRNRMNS 352
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,108
Number of Sequences: 5004
Number of extensions: 34546
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)