Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0018
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    42   9e-05
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    27   2.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   3.6  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   4.8  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   4.8  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    26   4.8  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.3  

>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +2

Query: 107 MKTRFNTYDIICMITEL-QRLIGMRVNQVYDIDNRTYVIRLQRSEEKSVLY*NLVTGFIQ 283
           MK RF+  DI  +  EL ++++G R+N  YD++ RT++++  + + K  +   + +GF  
Sbjct: 1   MKQRFSALDIAAIAAELREQVVGCRLNNFYDLNARTFLLKFGKQDAKYSIV--IESGFRA 58

Query: 284 HSLSGQRMSLP 316
           H     R + P
Sbjct: 59  HLTKFDRENAP 69


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 247 CFVLESGNRFHTTQFEWPKNV-APSGFTMKVSF 342
           CF +  G R  T +  +P+N   P  F+  + F
Sbjct: 153 CFTIHQGKRVATYELSYPRNANLPEAFSRSIEF 185


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 186  WFTLIPINLCSSVIMHMISYVLNLVFILRNVNYTIKNGIKKTKLWNWNTRILL 28
            WF L   NLCS  ++  ++ +L    +L     T ++G  KT   + N R+ L
Sbjct: 2030 WFVLDNANLCSPAVLDRLNSLLEHKGVLIVNEKTTEDGHPKTIKPHPNFRLFL 2082


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 43  IPIPKFGFLNSVFNSVI-NITQNEDEIQYIRYHMHDH 150
           I IPK   LNSV+NS + N + + D   Y  + + DH
Sbjct: 799 ISIPKANVLNSVYNSSLKNFSSSNDTSVY--HDVQDH 833


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 154 TAKIDWNESKPGL*YRQSYVCDTF--AAIRGEECFV 255
           T  I+++E KP L + Q+ + D+F  + I  + CF+
Sbjct: 120 TKLINFSEDKPRLVWSQNRISDSFLSSTISSDACFI 155


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 243 FSSDRCKRITYVRLSIS*TWFTLIPINLCSSVIMHMISYVLN 118
           FS       TYV  +   ++F  IP     SV  HMI+  LN
Sbjct: 391 FSISYPASFTYVVTAAERSYFNFIPSLFSKSVFSHMITSSLN 432


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 577 GKLVFLGNMIL----IILRRLPNDIILKCLMLI*CFSNNKLLNMDILGIIWTILNN 422
           G LVF G ++     I+ R  P + I+  LML   F N  +  + ILG++    NN
Sbjct: 211 GTLVFCGYILFDTYNILHRYSPEEFIMSSLMLYLDFINLFIRILQILGMLQNNDNN 266


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 55  KFGFLNSVFNSVINITQNEDEIQYIRYHMHD 147
           +F F  ++ +SV N+ + E E+Q I+  + D
Sbjct: 542 EFSFDGAIISSVENLAEEEIELQNIKSQLQD 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,008
Number of Sequences: 5004
Number of extensions: 51300
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)