Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0010
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    60   3e-10
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   5.1  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 30/63 (47%), Positives = 35/63 (55%)
 Frame = +1

Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
           PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L G
Sbjct: 102 PRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTG 161

Query: 433 ISS 441
           ISS
Sbjct: 162 ISS 164



 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 74  F*FRAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 247
           F  R EL  PGS  L G+  +YN  ++AH                  N LVPL++GAPD+
Sbjct: 40  FIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDV 99

Query: 248 AF 253
           A+
Sbjct: 100 AY 101


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 279 TPTPLPYIINFKKNCRKWCRNRMNS 353
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,541,743
Number of Sequences: 5004
Number of extensions: 24835
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)